Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02898 ATGTCAATTAACAAGGATATTGTTACTTTGAAGGATCCTTTTACTGAAGAGTTGCCTCAGTACATACATATAAATCAGAATGAGTTTTTCATGCGAAGGCACAAAAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGATGCTGATGACACTGACAGTGCATGCGGGGATAGCTGCTTGAATGTTTTAACCAGCACAGAATGCACCCCTGGTTATTGCCCTTGTGATATCTTGTGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCTAAAACAAAGTTGTTTAAAACTGAAGGCCGTGGATGGGGTCTTTTGGCTGATGAGGATCTTAAGGCAGGACAATTTGTCATTGAATACTGTGGAGAAGTTATATCATGGAAGGAAGCCAAACGTAGATCTCAGGCTTATGAAGATCAAGGCCTTAAAGATGCATTTATCATTTGCCTTAATGCATCTGAATCTATTGATGCAACCAGGAAAGGAAGCCTTGCTAGATTTATAAATCATTCCTGTCAACCGAATTGTGAGACGAGAAAATGGAATGTGTTGGGGGAAATAAGAGTTGGAATATTTGCAAAACATGATATTCCTATTGGAACTGAATTAGCTTATGATTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGTTGCCTATGTGGTGCTCTCAAATGTTCAGGGTTCCTTGGAGCAAAATCTCGTGGTTTTCAGGAGGATACTTATCTATGGGAAGATGATGACGATAGGTACTCTGTTGAGAAAATTCCTGTATATGATTCTGCAGAGGATGAACCAGTGTCAAATGTTAATGGACGAACTGAATCCTCTTTAGATGTGATGCTTAAAGCTGAGCAACTATCTGAGTCCACTGGTTTCAATGTTCAGTCCCTTGATTCAGTTCAGATGAAAGATTTAGATGTCAAAAAGATTAAGACTGAAGTAGCAGATGAGGATATGCACTTGTACACCCACGATACTGAACAGACGCTTTCACAAAAGAATGCAATGATATCACGAATCCGAGGTAATGCTGCAGGCAGAAACTATCACATTGGACCTAGGTCCATTTCTACCAAAAGATCAAGGGCATATAATGGCGGAAGGTTTAAAAATCTCTTAGAGAAGAAAATTGATGCCAAGTTTGCTGCTGGCCTCCTAGCATCCAAGGAAGCACAAGAGGAGATTCTAAATTCTGAGAAAAGAAAGGATGATGCTACATCTACTCTTGATTCCTTATACGATGAAATACGGCCTGCTATTGAGGAACACGAGAGGGATAGCCAAGACAGTGTATCCACCACTGTCGCTGAGAAGTGGATACAGGCTTGCTGCCTAAAATTGAAGGCTGAGTTTGATCTCTACTCGTCAATTGTGAAAAATGTTGCTTGCACTGCACACAGGGCACCTGGACAAGCAAAACCTACTGAAGTAGATAATGAAAACGAAATTAAGTTCTTGACAGGTTGA 1476 0.3991 MSINKDIVTLKDPFTEELPQYIHINQNEFFMRRHKKQKEEDIAICECKYDADDTDSACGDSCLNVLTSTECTPGYCPCDILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDLKAGQFVIEYCGEVISWKEAKRRSQAYEDQGLKDAFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPVYDSAEDEPVSNVNGRTESSLDVMLKAEQLSESTGFNVQSLDSVQMKDLDVKKIKTEVADEDMHLYTHDTEQTLSQKNAMISRIRGNAAGRNYHIGPRSISTKRSRAYNGGRFKNLLEKKIDAKFAAGLLASKEAQEEILNSEKRKDDATSTLDSLYDEIRPAIEEHERDSQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNVACTAHRAPGQAKPTEVDNENEIKFLTG 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02898 491 Pfam SET domain 104 210 IPR001214 GO:0005515
Vimu3g02898 491 ProSiteProfiles Post-SET domain profile. 217 233 IPR003616 -
Vimu3g02898 491 ProSiteProfiles SET domain profile. 93 210 IPR001214 GO:0005515
Vimu3g02898 491 Coils Coil 391 411 - -
Vimu3g02898 491 FunFam Histone-lysine N-methyltransferase 7 245 - -
Vimu3g02898 491 ProSiteProfiles AWS domain profile. 40 91 IPR006560 GO:0005634|GO:0042054
Vimu3g02898 491 SMART shorttest3 40 92 IPR006560 GO:0005634|GO:0042054
Vimu3g02898 491 SMART set_7 93 216 IPR001214 GO:0005515
Vimu3g02898 491 Pfam AWS domain 52 90 IPR006560 GO:0005634|GO:0042054
Vimu3g02898 491 SUPERFAMILY SET domain 19 230 IPR046341 -
Vimu3g02898 491 Gene3D SET domain 4 245 IPR046341 -
Vimu3g02898 491 PANTHER SET DOMAIN PROTEINS 17 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02898 Vimu-Chr3 43078448 43084827 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02898 75 232 C2H2 Transcription Factor Family AT2G23740 33.708 2.12e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu3g02898 SET 7.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02898 - - gmx:100804657 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02898 3 43078448 43084827 Vimu3g02898 3 43078448 43084827 ECH