Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02896 ATGGACCACGCTTTCCAAGCCATCATCGCTGCCATAGGTAGCTTCTTTGTCGTCACGCTTCTCCTCGCCGGCGTCATCATCCTCTGCCAGCAGTACCGCAACTCCTCCAAAGCCCGCACCCGCGCCATTCAGAGATCAACTCGACCCGCCCCCGCCCGCGACGCCTCTTTCTCTCTAGCCGTTGTCGACGCCAGCTGGTCCTCCGACCCCAACCTCATCAAGATCACGTGGGAGGAGCTCGCCGTCGCCACCGAAAACTTCTCCCCGCACCTCATCGTCGGCGACGGCAGCTTCGGCCTCGTCTACAAGGCCCGCCTCTCCACCAACGCCCTCGTCGCCGTCAAGAAGCTCTCTCCTGACGCCTTCCAGGGTTTCCGCGAGTTCCGGGCGGAGATGGAAACCCTAAGCAAGCTTAACCACCCAAACATCGTCAGAATCCTCGGGTACTGGGCCTCCGGCCCGGAACGCTTACTCGTCTATGAATTCATCGAAAAGGGAAACCTCGACCAGTGGCTCCACGAGCCCGATGTCTCCCGCTCCCCCCTGTCCTGGGAAACTCGAGTCAACATCATACGCGGCGTGGCCCATGGGCTTTCCTACCTCCACGGGCTCGAGAAGCCCGTCATTCATCGCGACATAAAGGCCAGCAACATCTTGCTGGACTCGAAGTTTGAGGCCCACATCGCTGACTTTGGGCTTGCCCGCAGGATGGATAAAACGCACTCCCACGTTTCGACGCAGTTCGCCGGCACTATGGGGTACATGCCGCCCGAGTACATTGAAGGGTCGAATGTGGCGAACACGAAGGTGGATGTGTATAGTTTTGGGATTTTGATGATCGAGACGATGTCGAGTCACCGGCCCAATTTGCCAATGAAATTGGGCGAGAGTGACATTGGGATGGTCCAGTGGGCGAGGAAGATGAAGGAGCAAAATGCAGAGATGGAGATGGTTGATGTGAATATTTCAAGAGAAGGGTTGAGTGAGGAAAGTGTGAGGGAGTATGTGCGCATAGCTTGTGAGTGCACCAGTCAAATGCAGAAGGAAAGACCATCAATGCCAGAAGTTGTAGAATGGTTGGATTCCACGCCTCTCAAACTTTTCATCACATCATAA 1116 0.5609 MDHAFQAIIAAIGSFFVVTLLLAGVIILCQQYRNSSKARTRAIQRSTRPAPARDASFSLAVVDASWSSDPNLIKITWEELAVATENFSPHLIVGDGSFGLVYKARLSTNALVAVKKLSPDAFQGFREFRAEMETLSKLNHPNIVRILGYWASGPERLLVYEFIEKGNLDQWLHEPDVSRSPLSWETRVNIIRGVAHGLSYLHGLEKPVIHRDIKASNILLDSKFEAHIADFGLARRMDKTHSHVSTQFAGTMGYMPPEYIEGSNVANTKVDVYSFGILMIETMSSHRPNLPMKLGESDIGMVQWARKMKEQNAEMEMVDVNISREGLSEESVREYVRIACECTSQMQKERPSMPEVVEWLDSTPLKLFITS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02896 371 Pfam Protein kinase domain 92 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02896 371 FunFam Phytosulfokine receptor 2 163 364 - -
Vimu3g02896 371 Gene3D Phosphorylase Kinase; domain 1 55 162 - -
Vimu3g02896 371 SUPERFAMILY Protein kinase-like (PK-like) 69 364 IPR011009 -
Vimu3g02896 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vimu3g02896 371 ProSiteProfiles Protein kinase domain profile. 87 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02896 371 FunFam Phytosulfokine receptor 2 46 162 - -
Vimu3g02896 371 Gene3D Transferase(Phosphotransferase) domain 1 163 366 - -
Vimu3g02896 371 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 362 - -
Vimu3g02896 371 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Vimu3g02896 371 SMART serkin_6 87 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02896 371 CDD STKc_IRAK 93 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02896 Vimu-Chr3 43073670 43076931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02896 72 360 Receptor kinase-like Gene Family AT5G07280 45.361 2.21e-70 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vimu3g02896 Pkinase 3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02896 - - gmx:100802728 613.224