Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02893 ATGCATCAATTACTTTCAGGTCTGCAGCATTGCCATGATAGGGGAATTCTTCACCGAGATATAAAGGGGTCGAACCTTTTGATTGATAAAAATGGGATGCTTCAGATTGCAGATTTTGGACTTGCCAATTTTTATGGTCCAGATTATCATCAACCTCTCACTAGCCGGGTTGTGACGCTATGGTACAGAGCTCCTGAACTATTGTTGGGTGACACAGACTATGGAGTTGGTGTTGATCTGTGGAGTGCTGGATGTCTCCTGGCAGAAATGTTCAAAGGATTCCCAATCATGCCTGGCAGAAATGAGGTTGAGCAAATTCATAAAATTTTCAGGCTATGTGGCACACCATCAGAGGAGTATTGGAGAAAATTGAAACTTTCTATTACTTTTAGACCTCCAAAGTCTTATAGACCCAGCCTTATAGAAACTTTCGGGGATCTCCCTCCTTCTTCTTTAGGTCTTGTATGCACCCTGCTTGCTCTGGATCCTGCATTCCGTGGAAGTGCATCCAAAGCTCTTAAAAATCAGGAATTGATAAGGAATGCTAAACCTGAAACTTATGCTCCAACTGTAGACATGGGTAGCACAAGTAGTACCTCATCTAGTGTAAACCCAGGAGGGGCTAAGGACCAATCACCTTTTTTTCTATCTCCATTTGGGGAATTAGATCGAAAGCTATCTCCAAAAACCCACCACCACCATGTTAATGTTGGTGAAGAAAACATCAAAACCCTTCCTCCATTACCCAAGTCTAAACCGAATGGTACCAAGAAAGATGACAGTAGATACAGACCAGACCAGTTTTTCAGGTCAGCTTCCACCAGAGAATTTAGATACTTGAAAAGGGAAGAACGTTTACTATTGGATTTTGATAATTAG 879 0.4187 MHQLLSGLQHCHDRGILHRDIKGSNLLIDKNGMLQIADFGLANFYGPDYHQPLTSRVVTLWYRAPELLLGDTDYGVGVDLWSAGCLLAEMFKGFPIMPGRNEVEQIHKIFRLCGTPSEEYWRKLKLSITFRPPKSYRPSLIETFGDLPPSSLGLVCTLLALDPAFRGSASKALKNQELIRNAKPETYAPTVDMGSTSSTSSSVNPGGAKDQSPFFLSPFGELDRKLSPKTHHHHVNVGEENIKTLPPLPKSKPNGTKKDDSRYRPDQFFRSASTREFRYLKREERLLLDFDN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02893 292 ProSiteProfiles Protein kinase domain profile. 1 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02893 292 ProSitePatterns Serine/Threonine protein kinases active-site signature. 16 28 IPR008271 GO:0004672|GO:0006468
Vimu3g02893 292 MobiDBLite consensus disorder prediction 236 267 - -
Vimu3g02893 292 FunFam Mitogen-activated protein kinase 1 189 - -
Vimu3g02893 292 PANTHER CELL DIVISION PROTEIN KINASE 1 176 - -
Vimu3g02893 292 Gene3D Transferase(Phosphotransferase) domain 1 1 202 - -
Vimu3g02893 292 Pfam Protein kinase domain 1 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02893 292 SUPERFAMILY Protein kinase-like (PK-like) 1 175 IPR011009 -
Vimu3g02893 292 MobiDBLite consensus disorder prediction 190 208 - -
Vimu3g02893 292 MobiDBLite consensus disorder prediction 253 267 - -
Vimu3g02893 292 SMART serkin_6 1 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02893 292 MobiDBLite consensus disorder prediction 184 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02893 Vimu-Chr3 43051110 43055459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02893 1 173 Core Cell Cycle Gene Families AT5G10270 51.136 2.26e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vimu3g02893 Pkinase 1.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02893 K08819 - gmx:100776854 348.591