Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02883 ATGAGCTCGAAAGTTCCCTCCCCAGATTCAATTGATGCATTGAAGTCTAAAATGTCTGTTCAAAAGGACACAGATAAGTTCTTCATGTCAATCACTGAAGGAGAGAAAAAGCCATTTGACTTTTTACGTGTTCTATATGGGTCTGGCATTGGAACTCAAGTCATCAGTTGCATCTTTTGTTGTATGACATTTACAAATATTGATCTAATTGTAGATGGTTGCATTGCTGGAGGTGTTGCGGGTGTCATGGTAGAGACAGCTTTATACCCCATTGATACCATCAAAACTCGACTACAGGTTGCTCGTGATGGAGGAAAGATTGTTCTGAAGGGTCTGTACTCTGGATTGTCTGGAAATCTTGTTGGTGTCTTGCCAGCGTCTGCAATTTTTATTGGAGTGTATGAACCCACAAAGCAGCAATTGCTACAATCATTGCCTGAGAATCTCAGTGCTGTGGCTCATTTTGCTGCAGGTGCTATTGGAGGCATTGCTTCTTCTATTGTTCGGGTTCCAACTGAGGTTGTTAAGCAACGGATGCAAATTGGGCAATTTAGATCAGCTCCAGATGCTGTTCGTCTCATTGTCTCAAATGAGGGTTTTAAAGGTCTTTATGCGGGATATGGTTCTTTCTTATTGCGAGATTTACCATTTGATGCCATAGAATTATGCATTTATGAGCAGCTCCGTATTGGGTATAAATTAGCGGCAAAAAGAGATCCTAATGATCCAGAGAATGCTATGCTTGGGGCAGTGGCTGGTGCCATAACTGGAGCAGTCACAACTCCTCTTGATGTAGTAAAGACCAGATTGATGGTTCAGGGATCACAAAATCATTACAAAGGCATCACTGATTGTGTGAGGACAATAGTTAAAGAAGAAGGAACTCATGCTCTTTTTAAGGGTATTGGGCCTAGAGTTTTGTGGATAGGAGTTGGCGGTTCAATATTTTTTTGTGTTCTTGAGAAGACAAAGCAAATACTTGCTCGGAATCGGCAAACCAAAGCTGAGATTCAGAAATGA 1020 0.4137 MSSKVPSPDSIDALKSKMSVQKDTDKFFMSITEGEKKPFDFLRVLYGSGIGTQVISCIFCCMTFTNIDLIVDGCIAGGVAGVMVETALYPIDTIKTRLQVARDGGKIVLKGLYSGLSGNLVGVLPASAIFIGVYEPTKQQLLQSLPENLSAVAHFAAGAIGGIASSIVRVPTEVVKQRMQIGQFRSAPDAVRLIVSNEGFKGLYAGYGSFLLRDLPFDAIELCIYEQLRIGYKLAAKRDPNDPENAMLGAVAGAITGAVTTPLDVVKTRLMVQGSQNHYKGITDCVRTIVKEEGTHALFKGIGPRVLWIGVGGSIFFCVLEKTKQILARNRQTKAEIQK 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02883 339 ProSiteProfiles Solute carrier (Solcar) repeat profile. 67 140 IPR018108 -
Vimu3g02883 339 Pfam Mitochondrial carrier protein 149 229 IPR018108 -
Vimu3g02883 339 Pfam Mitochondrial carrier protein 244 330 IPR018108 -
Vimu3g02883 339 Pfam Mitochondrial carrier protein 73 142 IPR018108 -
Vimu3g02883 339 FunFam S-adenosylmethionine carrier 1 chloroplastic/mitochondrial 72 339 - -
Vimu3g02883 339 ProSiteProfiles Solute carrier (Solcar) repeat profile. 149 231 IPR018108 -
Vimu3g02883 339 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 72 335 - -
Vimu3g02883 339 SUPERFAMILY Mitochondrial carrier 74 321 IPR023395 -
Vimu3g02883 339 ProSiteProfiles Solute carrier (Solcar) repeat profile. 244 326 IPR018108 -
Vimu3g02883 339 Gene3D Mitochondrial carrier domain 73 339 IPR023395 -
Vimu3g02883 339 PRINTS Mitochondrial carrier protein signature 86 100 IPR002067 GO:0055085
Vimu3g02883 339 PRINTS Mitochondrial carrier protein signature 73 86 IPR002067 GO:0055085
Vimu3g02883 339 PRINTS Mitochondrial carrier protein signature 249 271 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02883 Vimu-Chr3 42963683 42969376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02883 75 327 Chloroplast and Mitochondria Gene Families AT2G30160 32.028 2.54e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02883 K15111 - gmx:100800051 514.612