Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02880 ATGCCGGAATCGGAGACGGGGACGCCGACGGCTGCTTCGGTGCCGGCGACGCCAGATACTCCGGGCGGACCGCTGTTCACGTCGCTGCGTGTGGACTCGCTCTCGCACGAGCGTGACTCGTTCACCATGGCCAGATGCAAGTGCTTGCCGAGCAAAGGTCACACCTGCTTCACCGATTTCTCCGTTGGTGTTTCACTGCCCAATGTTTCTCTCACTCAAAAGGTTGGAGCAGAGTTTGTGGGGACATTCATATTGATATTCGCAGCAACGGCTGGACCGATAGTGAACAACAAGTACAATGGAGCGGAGACTCTGATGGGAAATGCAGCATGTGCAGGATTAACAGTGATGTTCATTATCCTCTCAATTGGACACATCTCAGGCGCACATCTCAACCCATCACTCACCATTGCCTTCGCCGCCTTTCGCCATTTCCCTTGGACCCATGTCCCTGCCTACATTGCAGCTCAAGTCTCCGCCTCCATCTGTGCCTGTTTTGCTCTCAAAGGCGTTTACCACCCTTTCCTCTCCGGTGGTGTCACTGTCCCTACTGTCACCGTTGGTCAGGCCTTTGCAACTGAGTTTATCATTACTTTCATTCTCTTGTTTGTTGTCACTGCTGTTGCCACTGATACTCGTGCGGTCGGTGAATTGGCGGGTATTGCTGTTGGGGCTACAGTTTTGCTCAACATTCTCATATCAGGGCCAACAAGTGGTGGTTCGATGAATCCAGTACGTACTTTAGGTCCTGCCGTTGCAGCAGGAAATTACAAGCATATATGGATCTATTTGGTGGCTCCTACGCTGGGTGCTCTCGCCGGTGCCGGCGTTTACACGCTCGTCAAGCTCCGTGACGACGAGGCTGAACCACCGCGACAAGTTAGGAGTTTCCGTCGCTAG 900 0.5333 MPESETGTPTAASVPATPDTPGGPLFTSLRVDSLSHERDSFTMARCKCLPSKGHTCFTDFSVGVSLPNVSLTQKVGAEFVGTFILIFAATAGPIVNNKYNGAETLMGNAACAGLTVMFIILSIGHISGAHLNPSLTIAFAAFRHFPWTHVPAYIAAQVSASICACFALKGVYHPFLSGGVTVPTVTVGQAFATEFIITFILLFVVTAVATDTRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHIWIYLVAPTLGALAGAGVYTLVKLRDDEAEPPRQVRSFRR 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02880 299 ProSitePatterns MIP family signature. 130 138 IPR022357 -
Vimu3g02880 299 Gene3D Glycerol uptake facilitator protein. 64 294 IPR023271 -
Vimu3g02880 299 Pfam Major intrinsic protein 68 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g02880 299 CDD MIP 73 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g02880 299 MobiDBLite consensus disorder prediction 1 15 - -
Vimu3g02880 299 FunFam Aquaporin NIP2-1 62 293 - -
Vimu3g02880 299 PRINTS Major intrinsic protein family signature 73 92 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g02880 299 PRINTS Major intrinsic protein family signature 149 168 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g02880 299 PRINTS Major intrinsic protein family signature 224 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g02880 299 PRINTS Major intrinsic protein family signature 261 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g02880 299 PRINTS Major intrinsic protein family signature 112 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g02880 299 PRINTS Major intrinsic protein family signature 193 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g02880 299 PANTHER AQUAPORIN NIP2-1 57 287 IPR034294 -
Vimu3g02880 299 SUPERFAMILY Aquaporin-like 69 289 IPR023271 -
Vimu3g02880 299 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02880 Vimu-Chr3 42940221 42943415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02880 25 299 Major Intrinsic Protein MIP AT4G10380 76.157 2.33e-151 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02880 K09874 - gmx:100804356 570.466