Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02875 TTGAACTCAGAAAAGCTCAGCCACCGCACTACCACCGCTGAGGTATTCTCCTTTGTTATTATTACCTGTAAGCAGTCACGCGAATCATGGAAACCAACAACAGTGCATGCACCACAAGTGCCAGAACTTAGATGGCCATGCCACCATTTCCACCACCATTTGCATAGCATCATCGCAAGCTTAGCTTTGATTCTACCATTTGGTAGTAGTGAGAGCAGAGCCACTTTCTGGGCTTCAGCTTCACTAATCACCATCATTCAACAGCTGCAAGACTGTCGTGGTGACCCTATAACCAACACTCCATTACACCAAGTTCTTAATCTCCAAAACCAAGCCATTTTCGTAGTCCAAATGGAAAGCATTGTTCCCCGGAGTGTTACCGCTTTGTTATTTTCCATGATATTTTTCTGCCTCACCCTGACAAAGATAGGAGTCACTTGTCTCTCACCCGATGGACAAGCCCTTCTTTCTCTTCTGCCTGCAGCAGGCCCTGATGCAAAATCATCACCTGTTCTCTCCTCATGGAACCCATCAAGCTCAACACCATGTTCATGGAAAGGTATCACTTGCTCCCCACAAGGTAGAGTAATCTCCCTCTCTATTCCAGATACTTTTCTCAACCTCTCCTATTTACCTCCTCGGCTATCCTCTTTATCAATGCTTCAACTTCTCAATCTCTCTTCCACCAATGTCTCTGGCACCATTCCACCCTCTTTTGGTCAACTTTTCCATCTTCAGCTGCTTGACCTCTCCTCAAACTCTCTCACTGGTTCCATACCTGCTGAACTGGGAAGCCTCTCTTCACTTCAATTCCTTTTCTTGAACTCCAACAGATTGACAGGAAGCATTCCTCAACATCTTTCTAATCTCACTTCACTTGAAGTTCTCTGCCTCCAAGACAATCTTCTCAACGGCTCAATCCCATCACAGCTAGGCTCTTTGACATCTCTGCAGCAGTTTCGGATAGGGGGAAATCCATATCTCACTGGACAAATCCCTTCACAGTTAGGCCTACTCACCAACCTCACCACTTTTGGCGCAGCTGCCACGGGACTTTCTGGTGCCATTCCCTCTACATTTGGTAACTTGATCAATCTACAGACTCTAGCACTTTATGATACTGAAATTTCTGGCTCAATGCCACCAGAACTTGGGTTGTGTTCTGAGCTGAGAAATCTGTATCTGCACATGAATAAGCTCACTGGTTCTATCCCTCCGCAATTGAGCAAGTTGCAAAAACTTACTAGCTTGCTACTTTGGGGCAATGCCTTAACTGGTCCAATCCCAGCAGAGCTTTCCAACTGTTCATCACTTGTTATATTTGATGTCTCTTCTAATGACCTCTCTGGTGAAATACCGGGGGACTTTGGGAAGCTGGTGGTTCTGGAACAGCTTCATCTATCTGATAATTCACTCACAGGTAAAATACCATGGCAGTTGAGCAACTGTACCAGCCTTTCTACTGTTCAGCTCGACAAGAATCAGTTATCAGGTACTATTCCCTGGGAGTTAGGTAAATTAAAGGTTCTACAGAGCTTTTTCTTATGGGGTAATCTAGTGTCTGGAACCATACCATCATCCTTTGGAAACTGCACAGAACTCTACGCACTTGACCTTTCAAGGAATAAGCTAACAGGTTCTATACCAGAAGAGATTTTCGGCTTGAAGAAGCTGAGTAAGCTTCTGCTTCTGGGAAATTCATTAACAGGAGGATTGCCACCAAGTGTTGCAAATTGCCAGTCTTTGGTGAGGTTGAGGGTTGGAGAGAACCAGCTTTCAGGCCAGATTCCTAAAGAGATAGGTCAATTGCAGAATCTGGTGTTCCTCGACCTGTACATGAACCATTTCTCTGGAAGCATACCAGTGGAGATTGCTAATATCACAGTTCTTGAGCTGTTAGATGTTCACAACAACTACCTCACTGGGGAAATTCCATCTGTGATTGGGGAGCTTGAAAATTTGGAGCAGCTTGATCTCAGTAGAAACAGTTTGACAGGAGAAATTCCTTGGAGCTTCGGAAACTTCAGCTATTTGAACAAGCTCATCCTCAACAATAATGTACTGACAGGACCAATCCCAAAATCCATTAGAAATTTGCAGAAGTTAACTCTTCTGGATTTGAGTTACAATAGCCTCTCTGGTGGCATACCCCCAGAGATTGGTCATGTTACAAGCTTAACCATCAGCTTGGACTTGAGCTACAATTCATTTACAGGAGAAATCCCAGAATCAGTGTCTGCTTTGACACAGTTACAATCACTTGATCTTTCTCATAACATGCTTTATGGAGAAATCAAGGTTCTGGGGTCTCTCACTAGCCTCACCTCTCTCAATATCTCCTACAACAATTTCTCAGGTCCTATCCCAGTAACTCCATTCTTCAGAACACTATCCTTCAATTCATATATTCAGAACCCTGGGCTTTGTCAGTCCATTGATGGGGCTATCTGTTCTTCTAGTCTGATTCGAAAAAATGGTTTGAAATCTGCAAAAACCATTGCTTTGATCACAGTCATTCTAGCCTCGGTTACTATAATTCTCATTGCTTCCTGGATTCTAGTAACTCGTAATCATGGATACAAGGTTGAAAAAACATTGGGGGCATCAACTTCCACATCAGGAACTGAAGATTTCTCTTATCCTTGGACTTTCATCCCATTTCAGAAAGTAAACTTCAGCATCGATAGTATCTTGGATTGCTTGAAGGATGAAAATGTTATTGGAAAGGGCTGCTCAGGTGTTGTGTACAAGGCTGAGATGCCAAATGGGGAGTTGATTGCGGTAAAGAAGCTTTGGAAAGCAAGCAAAGCAGATGAAATAGTGGATTCTTTTGCTGCAGAGATACAGATTCTTGGATACATTCGGCATAGGAACATAGTGCGGCTCATAGAATATGGCTACTCCATGAACATAACAGAGAAGAGTGATGTCTATAGTTATGGGGTGGTTTTGCTAGAGATTCTAAGTGGTCGCAGTGCTGTTGAATCCCATGTTGCAGATGGCCAACACATAGTGGAATGGGTGAAGAGGAAGATGGGAAGCTTTGAACCAGCTATATCAATACTAGACACAAAGCTGCAAGGTCTACCAGATCAAATGGTGCAAGAGATGCTTCAAACACTTGGAATTGCTATGTTTTGTGTGAACTCTTCCCCATCAGAGCGCCCCACAATGAAGGAAGTGGTTGCACTACTGATGGAGGTGAAGAGCCAGCCTGAGGAGATGGGCAAGACCTCTCAACCTCTAATAAAACAGTCCTTAAATCAAAACTGA 3273 0.4366 MNSEKLSHRTTTAEVFSFVIITCKQSRESWKPTTVHAPQVPELRWPCHHFHHHLHSIIASLALILPFGSSESRATFWASASLITIIQQLQDCRGDPITNTPLHQVLNLQNQAIFVVQMESIVPRSVTALLFSMIFFCLTLTKIGVTCLSPDGQALLSLLPAAGPDAKSSPVLSSWNPSSSTPCSWKGITCSPQGRVISLSIPDTFLNLSYLPPRLSSLSMLQLLNLSSTNVSGTIPPSFGQLFHLQLLDLSSNSLTGSIPAELGSLSSLQFLFLNSNRLTGSIPQHLSNLTSLEVLCLQDNLLNGSIPSQLGSLTSLQQFRIGGNPYLTGQIPSQLGLLTNLTTFGAAATGLSGAIPSTFGNLINLQTLALYDTEISGSMPPELGLCSELRNLYLHMNKLTGSIPPQLSKLQKLTSLLLWGNALTGPIPAELSNCSSLVIFDVSSNDLSGEIPGDFGKLVVLEQLHLSDNSLTGKIPWQLSNCTSLSTVQLDKNQLSGTIPWELGKLKVLQSFFLWGNLVSGTIPSSFGNCTELYALDLSRNKLTGSIPEEIFGLKKLSKLLLLGNSLTGGLPPSVANCQSLVRLRVGENQLSGQIPKEIGQLQNLVFLDLYMNHFSGSIPVEIANITVLELLDVHNNYLTGEIPSVIGELENLEQLDLSRNSLTGEIPWSFGNFSYLNKLILNNNVLTGPIPKSIRNLQKLTLLDLSYNSLSGGIPPEIGHVTSLTISLDLSYNSFTGEIPESVSALTQLQSLDLSHNMLYGEIKVLGSLTSLTSLNISYNNFSGPIPVTPFFRTLSFNSYIQNPGLCQSIDGAICSSSLIRKNGLKSAKTIALITVILASVTIILIASWILVTRNHGYKVEKTLGASTSTSGTEDFSYPWTFIPFQKVNFSIDSILDCLKDENVIGKGCSGVVYKAEMPNGELIAVKKLWKASKADEIVDSFAAEIQILGYIRHRNIVRLIEYGYSMNITEKSDVYSYGVVLLEILSGRSAVESHVADGQHIVEWVKRKMGSFEPAISILDTKLQGLPDQMVQEMLQTLGIAMFCVNSSPSERPTMKEVVALLMEVKSQPEEMGKTSQPLIKQSLNQN 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02875 1090 Gene3D Ribonuclease Inhibitor 598 696 IPR032675 -
Vimu3g02875 1090 SUPERFAMILY L domain-like 524 792 - -
Vimu3g02875 1090 Gene3D Phosphorylase Kinase; domain 1 886 969 - -
Vimu3g02875 1090 Gene3D Ribonuclease Inhibitor 307 402 IPR032675 -
Vimu3g02875 1090 ProSiteProfiles Leucine-rich repeat profile. 750 772 IPR001611 GO:0005515
Vimu3g02875 1090 SUPERFAMILY Protein kinase-like (PK-like) 896 1068 IPR011009 -
Vimu3g02875 1090 ProSitePatterns Protein kinases ATP-binding region signature. 907 930 IPR017441 GO:0005524
Vimu3g02875 1090 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 501 596 - -
Vimu3g02875 1090 Pfam Protein tyrosine and serine/threonine kinase 968 1064 IPR001245 GO:0004672|GO:0006468
Vimu3g02875 1090 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 148 308 - -
Vimu3g02875 1090 Pfam Leucine rich repeat N-terminal domain 149 191 IPR013210 -
Vimu3g02875 1090 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 309 402 - -
Vimu3g02875 1090 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 442 622 - -
Vimu3g02875 1090 Gene3D Ribonuclease Inhibitor 150 306 IPR032675 -
Vimu3g02875 1090 Gene3D Ribonuclease Inhibitor 500 597 IPR032675 -
Vimu3g02875 1090 Gene3D Ribonuclease Inhibitor 698 809 IPR032675 -
Vimu3g02875 1090 Gene3D Transferase(Phosphotransferase) domain 1 970 1068 - -
Vimu3g02875 1090 Pfam Protein kinase domain 903 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02875 1090 SUPERFAMILY RNI-like 224 625 - -
Vimu3g02875 1090 Pfam Leucine rich repeat 221 279 IPR001611 GO:0005515
Vimu3g02875 1090 Pfam Leucine rich repeat 510 568 IPR001611 GO:0005515
Vimu3g02875 1090 Gene3D Ribonuclease Inhibitor 403 499 IPR032675 -
Vimu3g02875 1090 ProSiteProfiles Protein kinase domain profile. 901 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02875 1090 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 405 500 - -
Vimu3g02875 1090 Pfam Leucine Rich Repeat 653 675 IPR001611 GO:0005515
Vimu3g02875 1090 Pfam Leucine Rich Repeat 462 483 IPR001611 GO:0005515
Vimu3g02875 1090 Pfam Leucine Rich Repeat 701 722 IPR001611 GO:0005515
Vimu3g02875 1090 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 597 692 - -
Vimu3g02875 1090 SMART LRR_typ_2 290 314 IPR003591 -
Vimu3g02875 1090 SMART LRR_typ_2 699 723 IPR003591 -
Vimu3g02875 1090 SMART LRR_typ_2 266 289 IPR003591 -
Vimu3g02875 1090 SMART LRR_typ_2 242 265 IPR003591 -
Vimu3g02875 1090 SMART LRR_typ_2 459 483 IPR003591 -
Vimu3g02875 1090 SMART LRR_typ_2 651 674 IPR003591 -
Vimu3g02875 1090 SMART LRR_typ_2 411 435 IPR003591 -
Vimu3g02875 1090 SMART LRR_typ_2 531 555 IPR003591 -
Vimu3g02875 1090 SMART LRR_typ_2 748 775 IPR003591 -
Vimu3g02875 1090 PRINTS Leucine-rich repeat signature 748 761 - -
Vimu3g02875 1090 PRINTS Leucine-rich repeat signature 245 258 - -
Vimu3g02875 1090 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 693 817 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02875 Vimu-Chr3 42882285 42886265 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02875 145 980 Receptor kinase-like Gene Family AT5G56040 43.929 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu3g02875 PK_Tyr_Ser-Thr 5.6e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02875 - - gmx:100819611 1474.53