Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02870 ATGGCAGCAGCAGCGGTTTCTTCACCGATGACTCAATCTGTGACTGCAACAGCGGCTCCCGTAACTGCATTGGGCGGAGGACCATTTTCAAATGCCTCGCTGTATGTGGGTGATCTCGACGGAAATGTAAACGAGGAGCAACTTTATGATCTTTTCAGTCAAGTTGCTCATATTGTTTCAATTAGGGTTTGCAGGGATCAGAGCAAACGATCCTCTCTTGGTTACGCATATGTCAATTTTTCTAATGCTCAGGATGCAACCAATGCCATGGAACTTTTGAACTTCACTCCTGTTAATGGAAAACCAATTCGAATTATGTTTTCTCAACGTGATCCAAGCATTCGGAAAAGTGGACAAGGCAATGTGTTCATCAAGAACCTGGACACATCAATTGATAACAAAGCATTGCATGACACTTTTGCTGCTTTTGGCACTGTACTTTCTTGTAAGGTGGCTACTGATAACAATACTGGTCTGCCAAAAGGGTATGGTTTTGTTCAGTTTGATAATGAAGATTCTGCCCAGAATGCAATCAAACAGTTGAATGGCATGTTGATCAATGACAAGCAAGTTTACGTTGGACTCTTTATCCGGCGTCAGGCTCGGACAAATGGATCACCTAAATTTACTAATGTGTATGTGAAAAATTTTTCTGAAGCATTCACAGACGAGGATCTCAATAAGTTGTTTGGCTCTTACGGTACCATAACCAGTGCAACTATCATGAAAGATATGAATGGGAAATCTAGATGTTTTGGTTTTGTAAATTTTCAAAATCCAGATTCAGCCGCAACTGCAGTGGAAAGACTAAATGGTACCGCCATTGATGATAAGGTTTTATATGTGGGGAGGGCTCAGAAGAAAGCAGAAAGAGAGGCTGAATTGAAAGCCAAAATTGAGCAAGAAAGAATAAGTAGATATGAAAAATTACAAGGTGCTAATTTGTATTTGAAAAATCTTGATGACAACTTCAGTAATGAAAAATTGAAAGATCTTTTTTCTGAGTTTGGGACTATAACATCTTGCAAGGTGACTGTCGACTCAAATGGACATAGCAAGGGATCTGGTTTTGTGGCTTTTTCTACACCAGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGCAAGTTGATTGGACGAAAGCCACTTTACGTTGCTGTGGCCCAGCGCAAAGAAGAGAGGAAAGCTCATTTACAGGCTCATTTTGCTCAAATCCGAACATCGGGTGGAATGACACCTCTGCCTGCTGGCATTCCTGTTTATCATCATCCAGGGGCACCAAGACTTGCTCCTCAACAATTATATTTTGGTCAAGGAAACCCTGGCTTCATGCCCCCACAGCCTGCTGGATATTCATTCCAGCAGCAAATTTTGCCTGGAATGAGGCCTGGGTTTGCCCCCAATTTCATTACTCCTTATCCCCTTCAAAGGCAGGCTCAGTCTGGACATAGGACTGGAGTTCGACGAAATGGAAATCTTCAACCAATGCAACAGAGCCAGATGATGATGCATCGTAATTCCAACCAAGGGTTTCGATACATGCCTAATGGTCGAAATGGTCCAACTATGCCCATGCACTTTGATGGTTCTGGAATTAATGCTGCACCTAATGATGGTCAGCGTTCTGGAGCATTGTCTACTACACTTGCATCGGCTCTTGCATCTGCCACTCCAGAAAATCAGCGCATGATGTTGGGTGAACATCTATATCCTCTTGTGGAGCGTCTCACATTAAACCAATACACAGCAAAGGTGACTGGGATGCTACTGGAAATGGACCAGTCTGAAGTAATCAATCTCATCGAATCTCCTGATGACCTGAAGACAAAGGTGTCGGAGGCTATGCAGGTATTATATGAGGCTGCACCTGAATCTGGAGTTGCTGATCAGATTGGATCGTTATCCGTAAATGAATGA 1917 0.4262 MAAAAVSSPMTQSVTATAAPVTALGGGPFSNASLYVGDLDGNVNEEQLYDLFSQVAHIVSIRVCRDQSKRSSLGYAYVNFSNAQDATNAMELLNFTPVNGKPIRIMFSQRDPSIRKSGQGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVATDNNTGLPKGYGFVQFDNEDSAQNAIKQLNGMLINDKQVYVGLFIRRQARTNGSPKFTNVYVKNFSEAFTDEDLNKLFGSYGTITSATIMKDMNGKSRCFGFVNFQNPDSAATAVERLNGTAIDDKVLYVGRAQKKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDNFSNEKLKDLFSEFGTITSCKVTVDSNGHSKGSGFVAFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAHFAQIRTSGGMTPLPAGIPVYHHPGAPRLAPQQLYFGQGNPGFMPPQPAGYSFQQQILPGMRPGFAPNFITPYPLQRQAQSGHRTGVRRNGNLQPMQQSQMMMHRNSNQGFRYMPNGRNGPTMPMHFDGSGINAAPNDGQRSGALSTTLASALASATPENQRMMLGEHLYPLVERLTLNQYTAKVTGMLLEMDQSEVINLIESPDDLKTKVSEAMQVLYEAAPESGVADQIGSLSVNE 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02870 638 SUPERFAMILY RNA-binding domain, RBD 31 201 IPR035979 GO:0003676
Vimu3g02870 638 Gene3D - 119 205 IPR012677 -
Vimu3g02870 638 Gene3D - 27 118 IPR012677 -
Vimu3g02870 638 CDD RRM4_I_PABPs 312 390 - -
Vimu3g02870 638 FunFam Polyadenylate-binding protein 201 295 - -
Vimu3g02870 638 FunFam Polyadenylate-binding protein 296 401 - -
Vimu3g02870 638 SMART poly_2 557 621 IPR002004 GO:0003723
Vimu3g02870 638 FunFam Polyadenylate-binding protein 541 624 - -
Vimu3g02870 638 FunFam Polyadenylate-binding protein 118 200 - -
Vimu3g02870 638 PANTHER RNA BINDING PROTEIN 31 94 - -
Vimu3g02870 638 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 32 618 IPR006515 GO:0003723
Vimu3g02870 638 Pfam Poly-adenylate binding protein, unique domain 553 618 IPR002004 GO:0003723
Vimu3g02870 638 SUPERFAMILY RNA-binding domain, RBD 209 394 IPR035979 GO:0003676
Vimu3g02870 638 CDD RRM3_I_PABPs 209 288 - -
Vimu3g02870 638 SMART rrm2_1 211 283 IPR003954 GO:0003676
Vimu3g02870 638 SMART rrm2_1 121 194 IPR003954 GO:0003676
Vimu3g02870 638 SMART rrm2_1 33 106 IPR003954 GO:0003676
Vimu3g02870 638 SMART rrm2_1 314 386 IPR003954 GO:0003676
Vimu3g02870 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Vimu3g02870 638 MobiDBLite consensus disorder prediction 526 546 - -
Vimu3g02870 638 Gene3D - 310 410 IPR012677 -
Vimu3g02870 638 Gene3D - 206 309 IPR012677 -
Vimu3g02870 638 SMART rrm1_1 121 194 IPR000504 GO:0003723
Vimu3g02870 638 SMART rrm1_1 211 283 IPR000504 GO:0003723
Vimu3g02870 638 SMART rrm1_1 314 386 IPR000504 GO:0003723
Vimu3g02870 638 SMART rrm1_1 33 106 IPR000504 GO:0003723
Vimu3g02870 638 SUPERFAMILY PABC (PABP) domain 497 624 IPR036053 GO:0003723
Vimu3g02870 638 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 545 623 IPR002004 GO:0003723
Vimu3g02870 638 FunFam Polyadenylate-binding protein 25 117 - -
Vimu3g02870 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 287 IPR000504 GO:0003723
Vimu3g02870 638 CDD RRM2_I_PABPs 118 194 IPR045305 -
Vimu3g02870 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Vimu3g02870 638 Coils Coil 282 310 - -
Vimu3g02870 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Vimu3g02870 638 Gene3D - 544 622 - -
Vimu3g02870 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Vimu3g02870 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 191 IPR000504 GO:0003723
Vimu3g02870 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 383 IPR000504 GO:0003723
Vimu3g02870 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02870 Vimu-Chr3 42857060 42860663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02870 31 618 Eukaryotic Initiation Factors Gene Family AT1G22760 58.086 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02870 K13126 - gmx:100783163 1060.44