Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02868 ATGGCGCGGGATGGGAGCGTCGTCCCTGCGGATCCGCAGGCGGTTGTAAAGAAGAAGACACAGTCGTCGAGAAGTTGGATTATGTTTGATGCTACAGGACAGGGTTCATTGCTCGACGCAGACAAATATGCAATCATGCATCGGGTTCAGATTCATGCGCGTGATCTCAGAATCCTTGATCCCTTGCTTTCTTACCCTTCCACCATTCTCGGTCGTGAGAAGGCCATTGTTCTTAACTTGGAGCATATCAAGGCAATTATCACAGCTGAGGAGGTATTGTTAAGAGATCCAACAGATGAAAATGTGATCCCTGTTGTGGAGGAACTGCAAAGGCGGTTGCCTCAATCAAGTGCCGGTCTTCAACAGCAAGGAGATGGAAAAGAGTACCTTGGTGGCCAAAATGATGCTGAAGCAGCTGAAGATGATGAGTCACCCTTTGAATTCCGGGCCCTGGAAGTTGCTTTAGAAGCCATTTGCAGTTTTCTTGCTGCACATAATTGTAATATGCAGATTAGTAGTCGTAATTTGGACAGAGTTCGTAAACTGAAGAGCGCAATGACAAGGCTGACGGCTAGAGTACAAAAGGTCAGAGATGAGCTGGAACAATTGCTGGATGATGATGATGATATGGCTGACCTATACCTGTCAAGAAAAGCTGGTTCATCATCACCAGTCAGTGGAACAGGTGCTTCAAATTGGTTTGCTTCCTCCCCCACCTTAGGATCAAGGATATCTAGGGCAAGTAGAGCAAGTCTAGCAACAGTCCGTTTAGATGAAAATGATGTGGAAGAGCTTGAAATGTTACTAGAGGCTTATTTTAGTGAAATTGATCATACGTTGAACAAATTAACCACACTGCGAGAGTACATTGATGATACTGAAGATTATATTAATATTCAACTTGACAACCATCGTAATCAGCTCATTCAGTTAGAACTCTTTCTTAGCTCTGGAACTGTTTGCCTATCTTTCTACTCTTTGGTGACTGCTATATTTGGCATGAATATCCCATACACTTGGAACGACAACCATGATTACATGTTCAAATGGGTAGTTATTGTCTCAGGGGTACTTTCTGCTGTGATGTTTGTCATAATTACAGCCTATGCTCGCAATAAGGGATTAGTTGGATCGTGA 1137 0.4354 MARDGSVVPADPQAVVKKKTQSSRSWIMFDATGQGSLLDADKYAIMHRVQIHARDLRILDPLLSYPSTILGREKAIVLNLEHIKAIITAEEVLLRDPTDENVIPVVEELQRRLPQSSAGLQQQGDGKEYLGGQNDAEAAEDDESPFEFRALEVALEAICSFLAAHNCNMQISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKAGSSSPVSGTGASNWFASSPTLGSRISRASRASLATVRLDENDVEELEMLLEAYFSEIDHTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSFYSLVTAIFGMNIPYTWNDNHDYMFKWVVIVSGVLSAVMFVIITAYARNKGLVGS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02868 378 Coils Coil 179 206 - -
Vimu3g02868 378 CDD Mrs2_Mfm1p-like 26 375 IPR039204 -
Vimu3g02868 378 Pfam CorA-like Mg2+ transporter protein 248 366 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vimu3g02868 378 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 314 366 IPR045863 -
Vimu3g02868 378 Gene3D - 12 97 - -
Vimu3g02868 378 Gene3D Magnesium transport protein CorA, transmembrane region 104 308 - -
Vimu3g02868 378 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 16 376 IPR039204 -
Vimu3g02868 378 FunFam Magnesium transporter MRS2-1 14 97 - -
Vimu3g02868 378 MobiDBLite consensus disorder prediction 114 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02868 Vimu-Chr3 42845807 42849619 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02868 1 351 MRS2 Gene Family AT5G64560 76.359 1.23e-178 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02868 K16075 - gmx:100810239 644.81