Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02862 ATGGGTGAGGCTTCGGGAGATGGTTCCGCTGATTGTTTCAGCCAGATGATGTCGTCGATGCCGGGTTTTCGCTTCCATCCTACGGATGAGGAGTTGGTGATGTACTATCTGAAGCGGAAGATTTGTGGGAAGAGGCTGAAGCTCAACGTTATTCGTGAAACCGATGTGTATAAGTGGGATCCTGAGGAGTTGCCTGGGCAATCCATACTGAAAACCGGAGATAGGCAATGGTTCTTCTTTTGTCACAGAGATAGGAAATATCCTAATGGTGCAAGGTCTAATCGAGCCACCAGACATGGATACTGGAAGGCAACAGGAAAGGATCGTAATGTGATATGCAATTCTAGGGCAGTTGGAGTGAAAAAAACCCTGGTTTTCTACATAGGCAGAGCTCCTAGTGGAACGCGGACTGATTGGGTTATGCACGAATACACCATGGATGAAGAGGAGCTTAAGAGATGCCAAGGTGTTAAGGACTACTATGCACTTTATAAGGTTTTCAAGAAAAGTGGACCTGGTCCTAAAAATGGTGAACAGTATGGTGCACCATTTAATGAACAAGAGTGGGCAGCGGATGATGACATTGTGGATTTTAATAATAACATAACTGATCAGGAGGATCCAAATGTTGTCCCTGAGAATGGGAGTGCACTGCATCCTTTGCTTGATGATGAAATCAATGACATCATTAGAGAAATTTTGGATGATGAGCTTGTCCTTGATCAGCAGCATGTGAATGGTTATCTTGACTTTCCTCAGGGTGAAGGGGGGATAAAGATTATTGTTGACGTTGTTGTTGATAAACTGGCTTCTGATACGACTGCAATAATTTGTGAAAAGCTGCTATATGTTGTGGTTGTTACTGAAGAAACACAAAGTACTGTTGTGGATCAGTTCTCTGAGGTGCTTATGTACAGTGAGACAACCGATCCTTGCTGTCAATATTTTGATGTGCAGCCCAGCTTTGACTTCAACCAGCCAGTCACTTCTCATTTACAAGTTTCTGAAACTTCTGAGGTTTCTTCTGCCTCCAACATCCAAAGAAAGGGGCTTGACTTGGATAAGGTTGGCTTTTTGGAAATTAATGATCTCATTGATAATGATCCTGCATTGTCAAATGTGGAAAATCCAGTGGAGTACCCGCAGTTTGAAGATGGGTTAAGTGAATTTGATCTCTACCAAGATGCAGAGATGTTTCTTCGTGACCTGGGGCCAATAATTCACGAACCAGATTCACATGCATATACAAATGCGATTGTCAGCAACAATATCGAAAGTCAAAGTTTCCAGTTGCAATCCGGCCGAGAGGATGCCAACCAAACTGTTGGTGAATTCTGGATGCATGGTGAAAGAAACACCCTGTTTCCATCAGAAGAAGGCTTTGTCGATTCTTTCTCACTATCATCCCCAGGTGTTGTATGTGAATCTCTCAGCTTTCCTACGGAAGGCAATTACAGTCAAAGTAGCACCGTGGAAGATGTTTCTACAAGTAGCTTCTCCTCTTCTCTCTGGGCCTTTGTTGAGTCAATACCTACTACTCCTGCATCAGCTGCTGAAAGTGCTTTGGTGAATCGAGCTTTGAATCGAATGTCTAGCTTCAGCAGGGTAAAGATCAGGCACACAAACATTACTGCAGGTAAAGACACTGCAACTACGAAGAAAGCAGGCAGAAAGGGATTTTCATTCCTTTTCTTCCCTATTCTTATTGCTTTATGTGCTTTTTTGTGGGTTTTTGTTGGAAACTTAAGATCATTAGGGAGATGTATCTCTCCTTGA 1776 0.4296 MGEASGDGSADCFSQMMSSMPGFRFHPTDEELVMYYLKRKICGKRLKLNVIRETDVYKWDPEELPGQSILKTGDRQWFFFCHRDRKYPNGARSNRATRHGYWKATGKDRNVICNSRAVGVKKTLVFYIGRAPSGTRTDWVMHEYTMDEEELKRCQGVKDYYALYKVFKKSGPGPKNGEQYGAPFNEQEWAADDDIVDFNNNITDQEDPNVVPENGSALHPLLDDEINDIIREILDDELVLDQQHVNGYLDFPQGEGGIKIIVDVVVDKLASDTTAIICEKLLYVVVVTEETQSTVVDQFSEVLMYSETTDPCCQYFDVQPSFDFNQPVTSHLQVSETSEVSSASNIQRKGLDLDKVGFLEINDLIDNDPALSNVENPVEYPQFEDGLSEFDLYQDAEMFLRDLGPIIHEPDSHAYTNAIVSNNIESQSFQLQSGREDANQTVGEFWMHGERNTLFPSEEGFVDSFSLSSPGVVCESLSFPTEGNYSQSSTVEDVSTSSFSSSLWAFVESIPTTPASAAESALVNRALNRMSSFSRVKIRHTNITAGKDTATTKKAGRKGFSFLFFPILIALCAFLWVFVGNLRSLGRCISP 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02862 591 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
Vimu3g02862 591 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 200 - -
Vimu3g02862 591 FunFam Nac domain-containing protein 86 28 172 - -
Vimu3g02862 591 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Vimu3g02862 591 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Vimu3g02862 591 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02862 Vimu-Chr3 42789453 42792780 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02862 6 589 NAC Transcription Factor Family AT1G34190 43.344 7.83e-132 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu3g02862 NAM 3.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02862 - - gmx:100794925 890.567