Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02861 ATGGCCACCTCCCAGTCCCAGCATCGCTGCGTTTTCGTTTCATCTTTAAATTTTCTATCTCTGTGGCTTCGTCTTATTGCAACCTTGGATGCTGTCAATTTCAACGAGATTGGAATTTGTGTTATTCATGCACGTTTGTTGGGTTATGACTGTTGTTGTGATTTTATTATAGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTGTCGAAATCTGCCAGGAGGTTGGCCCAGTAGTCTCATTCAGATTAGTTATTGACAGGGAAACTGGGAAACCTAAAGGTTATGGATTCTGTGAGTATAAGGATGAAGAGACAGCTTTAAGCGCTAGACGAAATCTTCAGGGTTATGAAATTAATGGCCGGCAATTACGTGTTGATTTTGCCGAAAATGACAAAGGGACTGACAGAAATAGAGAACAGGGTCGTGGCGGGCCTGGAATGACAACAAATGTTGATCCTCAGAAACAAGTTGGTGGCCCAGCTGGGGAAGCTGTTCAGCATCAGCCTATCGGTCTTCATATTGCCATAACAGCTGCAACTGTCATGACAGCGGCTCTAGGTGGTGCTCAGTTTGGCATCCAGTCAAATCAAAATAGTTTACAGAGTCAGTCAGCATTGGCACATGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGCTTACGGAGATGATATCTGAACTCAAGGGAATGGCTACACAAAACAAGGATCTGGCTCGCCAGCTTTTGCTTTCAAGGCCACAGTTGCCCAAGGCTCTTTTCCAGGCTCAAATAATGCTAGGAATGGTGTCTTCCCAAGTGTTACAAATGCCAAACCTTAGGCTGGTTTCAGATCAACCCTCACAGTCTTTAATGAATGAAGGTCAGCTGGCTCAGCCACCATTGGTTCAAACTCTGCCTGGCCTTCCCCCTCATGGGCAGAGCAAATTGCAGTCTGGTTTGACACCTTATGCTCAAGAAGGCCAAGTCAACACCATACTTCATAATCCTCTGGCTCCTAACCAATTAACTGCTCATCCAAAGCCTCCAGTGCAGCCCCGAATTCCCGTTCAACAACATCCAAACAACCTTGTATTGCCTGGAACTTTGTCAGGGCAGCCTAATTTATTACTTCCTTCTGTGCGCCCAGGTCTGGGAAGTTTGTCTGCCAGGCCTCCAATTCAACCGACCACTTCAACTGCTCTAAACCAGCAAATGCATGTCTCTTTGCTACAAAATTCTGCACATGTTGGAAACTCAACTGTCGGACATAATATTCAAATGGTTCGTCCAGATGCCAACTTTCAGCCTGGTCCCTCCATATCGGCGTCTACTTCTCAGTTATCGAGTAAAGGTGACAAATCTTCTAATGTAACGTATTCAAACATGCCTTTGGGAATAGAGAAAAAAAACAATGTTCGTGATTCTTCAGAATCTTTTTCTCGCCCATCAAAGCTCATGAAATTGGATGAGGGAAGGAGTACACCCCTTTCTACTGGGATGTCAGACGTGCCTGTCACTGATGGACCGTCTCATACTCTTGGAAGAAGCTCATTGCCTGTACTTGCTACTCCTAAAGGAGAAGGGCAATACTCTGAGCTACAATCTTCTCAGCTTCCTCCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACACCAGAGCAATTGAGTTCCTTACCACCAGAGCAGCAACAACAGGTAATTCAGCTCCAGCAGGCTCTTCGGCGAGATCAGATGCAGCCCTCATAA 1749 0.4551 MATSQSQHRCVFVSSLNFLSLWLRLIATLDAVNFNEIGICVIHARLLGYDCCCDFIIVGNIPYDATEEQLVEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNREQGRGGPGMTTNVDPQKQVGGPAGEAVQHQPIGLHIAITAATVMTAALGGAQFGIQSNQNSLQSQSALAHDPLTLHLAKMSRSQLTEMISELKGMATQNKDLARQLLLSRPQLPKALFQAQIMLGMVSSQVLQMPNLRLVSDQPSQSLMNEGQLAQPPLVQTLPGLPPHGQSKLQSGLTPYAQEGQVNTILHNPLAPNQLTAHPKPPVQPRIPVQQHPNNLVLPGTLSGQPNLLLPSVRPGLGSLSARPPIQPTTSTALNQQMHVSLLQNSAHVGNSTVGHNIQMVRPDANFQPGPSISASTSQLSSKGDKSSNVTYSNMPLGIEKKNNVRDSSESFSRPSKLMKLDEGRSTPLSTGMSDVPVTDGPSHTLGRSSLPVLATPKGEGQYSELQSSQLPPDVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQMQPS 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02861 582 Gene3D - 536 581 IPR038192 -
Vimu3g02861 582 Pfam Transcription termination and cleavage factor C-terminal 544 576 IPR026896 GO:0031124
Vimu3g02861 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 132 IPR000504 GO:0003723
Vimu3g02861 582 MobiDBLite consensus disorder prediction 129 165 - -
Vimu3g02861 582 MobiDBLite consensus disorder prediction 427 536 - -
Vimu3g02861 582 SUPERFAMILY RNA-binding domain, RBD 56 150 IPR035979 GO:0003676
Vimu3g02861 582 FunFam Cleavage stimulating factor 64 200 275 - -
Vimu3g02861 582 MobiDBLite consensus disorder prediction 434 463 - -
Vimu3g02861 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 126 IPR000504 GO:0003723
Vimu3g02861 582 Pfam Hinge domain of cleavage stimulation factor subunit 2 203 273 IPR025742 -
Vimu3g02861 582 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 578 - -
Vimu3g02861 582 FunFam Related to Cleavage stimulation factor 535 577 - -
Vimu3g02861 582 FunFam Cleavage stimulating factor 64 49 163 - -
Vimu3g02861 582 SMART rrm1_1 55 128 IPR000504 GO:0003723
Vimu3g02861 582 CDD RRM_CSTF2_RNA15_like 56 130 - -
Vimu3g02861 582 Gene3D - 53 165 IPR012677 -
Vimu3g02861 582 MobiDBLite consensus disorder prediction 492 515 - -
Vimu3g02861 582 Gene3D - 194 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02861 Vimu-Chr3 42777859 42784329 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02861 56 129 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.02e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02861 K14407 - gmx:100794399 845.884