Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02853 ATGGAAGATGTTCCTTCAATGATTTACAAAAACCCCATTAGGAGAAACTCTAGGCGATCTACAATGTATCTGGGCGTGAGAAAAAGGCCATGGGGAAGATATGCTGCTGAGATTAGGAACCCTTATACCAAAGAGAGACACTGGCTAGGCACATTTGACACTGCTGAAGAGGCTGCTATAGCCTATGATCTTTCATCTATCAACATTTCTGGTATCAATGCTCGAACCAATTTTCATTACCCTTTTCTGTCTCTTCCGCCACCTCCTATCTCATTGCCTCCTCCACCGCCGCCACCTACCCCGGAGCTGCATCAAAGTGTTGGAGTTTTTCCGGAGATGAACTATGCTTTTGATGGCGATGATGAATCTCTGGTTATTGCTTCCATTTTGCAAAGCTTTTCTAACTCTGGTAACTGTTCTTTTTAG 426 0.439 MEDVPSMIYKNPIRRNSRRSTMYLGVRKRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAIAYDLSSINISGINARTNFHYPFLSLPPPPISLPPPPPPPTPELHQSVGVFPEMNYAFDGDDESLVIASILQSFSNSGNCSF 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02853 141 CDD AP2 23 78 IPR001471 GO:0003700|GO:0006355
Vimu3g02853 141 Pfam AP2 domain 24 64 IPR001471 GO:0003700|GO:0006355
Vimu3g02853 141 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Vimu3g02853 141 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700|GO:0006355
Vimu3g02853 141 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Vimu3g02853 141 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Vimu3g02853 141 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Vimu3g02853 141 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 97 - -
Vimu3g02853 141 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Vimu3g02853 141 FunFam Ethylene-responsive transcription factor 2 21 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02853 Vimu-Chr3 42736096 42736521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02853 23 80 AP2-EREBP Transcription Factor Family AT1G12890 79.310 4.38e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu3g02853 AP2 5.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02853 - - var:108324731 247.669