Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02851 ATGTTAGAGTCACGTCACTTTCCACGATCTCGCGCGAGAGCGTTTTTGACTGCCTTCATTTTTCTTTTTCTATCCATCTATTTTACACTCTCACTCCACGCCTCACTCAAAAAAGATAACAATCTTACACTCTCACCAGCTGACAGAGATAGAGAGAGAAAGAGAAACATCTCTGGAGTTGTCGAAAATTGGCGTATTTTGGTGAGATCGGGGTGTGGGTGTAGTGTGGCTGGTGTGGTGGTGGCGGAAGAGTACTGGGGTGTTTTTGTGATGGTGTATTGGTGTGGGAGGTCTTGTTTGGATCTGAAGTTATTGAGAGATGCTTTGCATAGTCTGAGGACTAATTTACAGGACCCTAACAATGTTTTGCAAAGTTGGGATCCTACACTCGTCAATCCATGTACATGGTTTCATGTAACATGCAACAATGATAATAGTGTTATCAGAGTTGATCTGGGGAATGCTGCTTTGTCCGGTCAACTTGTTCCGCAGCTTGGTCAGCTCAAGAATTTGCAGGAACTTTACAGCAATAACATTACTGGCCCTATCCCAAGTGACCTGGGGAATCTTACTAACCTGTTTCACTGGCCCAATCCCAGATTCATTGGGCAAGTTGTCAAAATTGCGTTTCCTGATAGCCGGCTTAACAACAACAGCTTGTCAGGTCCTATACCCATGTCGCTGACTAATATTACGGCTCTCCAAGTTCTGGATTTGTCTAACAATCATCTTTCAGGAGTGGTTCCCGACAATGGCTCCTTCTCATTATTCACTCCTATCAGTTTTGCAAATAACTTGGATCTATGTGGACCCGTTACTGGGCACCCCTGTCCTGGCTCTCCTCCATTTTCTCCTCCTCCTCCTTTTGTTCCTCCACCTCCAATTTCTGCCCCAGGTAATCTTCCTTCTGTTGCAATTGATCTTTTAGTTGTAAAGGTGATTTTACCATGCTTATGTGCCACTGGAGCAATAGCTGGAGGAGTTGCTGCTGGTGCTGCTCTATTGTTTGCTGCACCTGCAATTGCATTTGCCTGGTGGCGTAGAAGGAAACCGCAAGAATTTTTCTTTGATGTGCCTGCTGAAGAGGATCCTGAAGTTCATCTAGGACAACTTAAAAGGTTCTCTCTACGAGAACTGCAAGTTGCAACAGATACTTTCAGCAATAAGAACATTCTCGGGAGGGGAGGATTTGGTAAGGTGTACAAAGGACGGTTGGCAGATGGTTCATTGGTGGCTGTGAAACGGTTGAAAGAGGAACGCACACCTGGTGGGGAGCTTCAGTTTCAGACTGAAGTAGAGATGATTAGCATGGCTGTGCATAGAAATCTCCTTCGACTACGTGGGTTTTGTATGACACCCACAGAAAGGCTACTTGTTTATCCCTACATGGCTAACGGAAGTGTTGCCTCATGCTTAAGAGGTAGATCTTCTCGTCCTCCACATCAAGAACCCCTGGATTGGCCAACTAGGAAAAGAATAGCTTTGGGATCTGCAAGGGGTCTTTCATATTTGCATGATCACTGTGATCCAAAGATTATTCATCGCGATGTGAAAGCTGCAAACATATTGCTGGATGAAGAGTTTGAGGCTGTTGTTGGGGACTTTGGATTGGCCAAACTCATGGATTACAAGGACACCCATGTGACAACTGCTGTAAGGGGCACAATTGGGCACATAGCTCCTGAGTACCTATCCACTGGTAAATCTTCAGAGAAAACCGATGTTTTTGGTTATGGTATCATGCTTCTGGAGCTGATCACTGGACAGAGAGCTTTTGACCTTGCTCGGCTTGCAAATGACGACGATGTTATGCTGCTTGATTGGGTAAAAGGACTCCTGAAGGAGAAAAAGCTTGAAATGTTGGTTGATCCTGATCTACAAAACAAATACATAGAAGCTGAGGTAGAACAATTAATCCAGGTTGCACTACTCTGCACGCAAGGTTCCCCTATGGACCGACCAAAGATGTCAGAAGTGGTGAGAATGCTTGAAGGTGATGGCTTGGCAGAGAGATGGGATGAGTGGCAAAAGGTTGAAGTTCTCCGGCAGGAGGTGGAGCTGGCCCCTCATTCCAATTCTGACTGGATTGTCGACTCGACTGAAAATCTGCATGCAGTTGAGTTATCTGGTCCAAGAACCCAACAATTGGCGCCCACCGTGGGGCAAGGATTCAAGAATTCCCTAGGAGCAATGGCAACCAAGTTCGACGTAGAAAAGTTCAACGGCGCTAATGACTTCGGGCTGTGGAAGATCAAGATGGAGGCAATCTTGATACAGCAGGGATGTGTTGAAGCGTTGAAGGGTGAGTCGAAGATGAGTGATACCATGACTCAAGAAGAGAAGAAGAAGATGGGAGATAAGGCAAGGAGTGCAATCATCTTGTGCCTTGGTGATAAGGTACTGAGGGAGGTTGCGAAGGAGAAGACTGCCGCTGAAATCTGGGTAAAACTAGAGTCTCTATACATGACGAGATCGTTGGCTCATAGGCTGTGCCTGAAGCAGCAACTCTTTTCGTTCAAGATGTCAGAATCAAGAACGATAGAGGAGCAGATTGCAGAATTCAGCAAGATAGTTGATGATCTGGAGAATATTGGAGTGAAGTTGGAGGATGAAGATAAAGCTGTCATCCTGTTAAATGCTCTTCCCAAAACCTTCGAGCATTTCAGGGATGCGTTACTCTACGGGAAAGATCAAGTGATCACGTTAGAGGAGGTTCTGACGTCAATTCGAACCAAGGAGTTCCAAAAACTCCAAGATTCGAAGACAACCGAGGAAGGAGCGTCCGGTTTGATTGCGGTAAAAGGGAAAGGGAAGAAGCAGTCTGGAAAAGAGAAGAAGCTGAATCCGGACGGTACGAAGCAGGTGCGTTGCTTCAAGTGCCAGAAGATGGGTCATATCAAGAAGTTCTGCCCGGAGAAAGGAAAGGCCGGTCGGCCACAAGAAACCGCTGATGTGGCAGAGGCGTCTGAGGGATATGAGTCGGCCGGAGTGCTGGTGGCTTCGTCTGAAGACTCTCAAAGGAGCTGGGTCATGGATTCCGGCTGCTCCTATCACATGTGCCCGGTAAAGGAGTTTTTTGAGAATCTGGATCAGAAAGAGCATGGTAATGTACTGCTCGGAAATAACAAAGCTTGCCGAGTGCAAGGTGTGGGGTCGGTGAGGCTGAAGATGTTTGACAATCGTGAGATGGTGTTGCAGGCCGTCCGGTATGTGCCCGAACTAAAGAGAAATTTGATTTCTATTAGTGCATTTGATCTTGGAGGTTACACCACTAAAGTTGAAGATGGAGTAATGAGGGTTTGTTCTGGAGATTCTGTGGTTGCCAAAGGCAGAAGGAGGAACGGCTTGTACATTCTGGAGGGATCAACTGTCATTGGTCATGTCTCAGTAGCAAGTGGGACCGAGAATACCGCCCGGTTATGGCACTTGAGGATGGGACACATCAGTGAGAAAGGTCTTGAAGAATTGGAAAAGCAAGACTTGCTTCTGGGAGACAAACTGCAGAAGCTGGATTTCTGTGACCATTGTGTCTTAGGGAAATCACACAGGATACCGTTCGGAAAAGGGAAACACTCAACCGAACGGCCCTTTGAATATGTCCATGCTGACTTATGGGGACCGGCAAGAACCTTAACTCATGGTGGAGGAGCGTATTTCTTAAGTATAATTGATGATTTCTCAAGGAGAGTGTGGATTTACGTTCTAAAGAATAAGTCTGAAACGTTTCAGAAGTTCAAAGAGTGGCACACACAGATTGAAAACCAATTGGGGTGTAGGCTGAAATGCCTAAGAACCGATAATGGGCTGGAGTTCGTTTCAGAGGAGTTTAATGGTTTTTGCAAAGAGAAAGGGATCAGGAGGCACAGAACGGTCGTTGGAACTCCTCAACAGAATGGATTGGCCGAACGGATGAACAGAACTATTCTGGAGAGGGTCCGGTGCATGTTGTTGGGATCAGGGTTGTCAAAAGCTTTCTGGGGAGAGGCTGCCAATACGGCCGTCTATCTGATTAACAGGAGTCCGTCTTCAGCTCTCAATTTTAAAACGCCAATGGAAGTGTGGAGTGGACGACCGGCTGACTATTCACACTTGAGAGTGTTTGGTTCTTTGGCGTTTGCTCATGTCAGGGGTGATAAGCTGGATTCCCGGGCGGCGAGATGTATCTTCCTTGGATACGGCGACGGAGTTAAGGGATACAGGTTATGGAGGTTAGATTCACCTTCAAAACTAATCATTAGTAGGGATGTCATTTTTGATGAAACGAGGATGGCGATGCAACCGGAAAACTCTGGAAGCGAGAAGAAGATTCTCGTGGAGGTGGAGCATACTACTAATGGAGCTGGCACGCCCGGTGGGACTGAGGAAAACCAAACGGGTGAAGGGCAAGTTGAAACCGGTCGGACGATAGCTGAGAACCGACCGGATGAATTTCGAATAGACCTTGGTGATGACACTGATGATATGTCCGGTGAGGGAAGTCATGGAAAAGCTGCTGGTGTTGATTTGAGAAACTATCAGCTTGTTCGTGACAGAGAAAGAAGGATCTCCAAGCCAACCAAACGGCTTGGAGAGGCGGATCTAATCTGCTACGCCCTGAACGCTGCTGAAGATATTAACCGATCGGATGAACCGAGAAGTTATAAGGAGGCTCTTGACAGCAGCGACCGGCATCTTTGGCAGGGTGCTATGGAAGAAGAGTTGGAGGCTTTGAAAAAGAATAACACCTGGAGATTGGTGGATCTGCCGAAGGGTAAGAAGGTCATAGGTTCGAAATGGATTTTCAAGAAAAAGGAAGCTACACCGGGCGGTGAGAAAGCGAGGTACAAAGCTAGGCTTGTTGCCAAAGGCTTTACTCAGATTGAAGGCGTAGACTATCATGAGGTCTTTGCTCCAGTGGTTAAGCATTGTTCGGTCAGAGTTCTGATGGCAATAGTTGCGCATTGCAATTTGCATCTTGAACAGTTGGACGTCCGGACAGCTTTTCTGCACGGCGATTTGGAAGAAACCATCTATATGAAGCAACCGGACGGTTTCGCTGTGGATGATAGGGTGTGTCTGTTGCAGAAGTCACTTTATGGCTTGAAGCAAAGCCCAAGGCAGTGGTACAGGAAATTTGATGACTTTCTGATAAAGCTGAACTTCAAGCGGTGCAATTATGACGACTGTGTTTACACTCTGAATCATGGCGGTGAAATGTTATATCTCTTGCTCTATGTGGATGATATTCTAATTGCTAGCAGTGACAGGGGCATGATCGGTGAGACGAAAGCAAAGTTGGCGGATGCTTTCGAAATGAAAGAGCTTGGGGAAGCAAGGCGGATTTTGGGCATAGACATTAAAAGGGAGAGACCGGGCGGTAACCTTTTTCTGTCACAGGAGTGTTATTTGCAGAAGGTAATTTCAAGGTATCGGATGGCTGAGTCTAAAATAGCCAACACGCCGGTCGGTCAACACTTGAAACTTACCAAGGAGCAATGCCCAAAGACCGAGGAAGAAAGAAAGAAGATGGAATCTGTTCCATTTTCAAATGGGATTGGGAGCATTATGTACGGCATGGTCTGCACAAGACCGGACGTGGCGCACGGTGTCAGTGTTCTCAGTCAGTTCATGGTTAATCCTGGACCAACACACTGGGAAGCGTTGAAGTGGATGCTCAGATACATACGGGGGTCTCTCGGTACTGGATTGTTTTTTCAGAATAACTTTCAAGGTGGAGGTTATATTGAAGGTTTTGTTGATTCCGACTTTGCCGGATGCATGGACACTAGGAAATCCCGGTCGGGATATGTGTTTACACTGTTCGGGACTGCTGTTAGCTGGAGGTCTACATTACAGTCGGTTGTGGCTTTGTCAACTACGGAAGCTGAGTATTATGCTCTTGCTGAAGGAGTTAAGGAGGCGCTGTGGTTGAAAGGTTTGGTTCGAGAACTTGGTTTCGATCAGAAGTCTGTATGTGTTCATTGTGACAGCCAGAGTGCTATTCATCTGGCCAATCATCAGATTTATCATTCCAGGACCAAGCATATTGACGTCAAGCTGCACTTTGTCAGAAGCATTGTTGAATCCGGTGACGTTCAAATCTGCAAAATTGCATCCGAAGAGAATCCTGCAGATATGTTAACAAAGCCGCTCGCTAAGGAGAGGTTTCTCTTTCTGTTGTCCAGGATTGGGTGTCTACCGGTCGGTCACTAA 6192 0.4656 MLESRHFPRSRARAFLTAFIFLFLSIYFTLSLHASLKKDNNLTLSPADRDRERKRNISGVVENWRILVRSGCGCSVAGVVVAEEYWGVFVMVYWCGRSCLDLKLLRDALHSLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGQLKNLQELYSNNITGPIPSDLGNLTNLFHWPNPRFIGQVVKIAFPDSRLNNNSLSGPIPMSLTNITALQVLDLSNNHLSGVVPDNGSFSLFTPISFANNLDLCGPVTGHPCPGSPPFSPPPPFVPPPPISAPGNLPSVAIDLLVVKVILPCLCATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRGRSSRPPHQEPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNKYIEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHSNSDWIVDSTENLHAVELSGPRTQQLAPTVGQGFKNSLGAMATKFDVEKFNGANDFGLWKIKMEAILIQQGCVEALKGESKMSDTMTQEEKKKMGDKARSAIILCLGDKVLREVAKEKTAAEIWVKLESLYMTRSLAHRLCLKQQLFSFKMSESRTIEEQIAEFSKIVDDLENIGVKLEDEDKAVILLNALPKTFEHFRDALLYGKDQVITLEEVLTSIRTKEFQKLQDSKTTEEGASGLIAVKGKGKKQSGKEKKLNPDGTKQVRCFKCQKMGHIKKFCPEKGKAGRPQETADVAEASEGYESAGVLVASSEDSQRSWVMDSGCSYHMCPVKEFFENLDQKEHGNVLLGNNKACRVQGVGSVRLKMFDNREMVLQAVRYVPELKRNLISISAFDLGGYTTKVEDGVMRVCSGDSVVAKGRRRNGLYILEGSTVIGHVSVASGTENTARLWHLRMGHISEKGLEELEKQDLLLGDKLQKLDFCDHCVLGKSHRIPFGKGKHSTERPFEYVHADLWGPARTLTHGGGAYFLSIIDDFSRRVWIYVLKNKSETFQKFKEWHTQIENQLGCRLKCLRTDNGLEFVSEEFNGFCKEKGIRRHRTVVGTPQQNGLAERMNRTILERVRCMLLGSGLSKAFWGEAANTAVYLINRSPSSALNFKTPMEVWSGRPADYSHLRVFGSLAFAHVRGDKLDSRAARCIFLGYGDGVKGYRLWRLDSPSKLIISRDVIFDETRMAMQPENSGSEKKILVEVEHTTNGAGTPGGTEENQTGEGQVETGRTIAENRPDEFRIDLGDDTDDMSGEGSHGKAAGVDLRNYQLVRDRERRISKPTKRLGEADLICYALNAAEDINRSDEPRSYKEALDSSDRHLWQGAMEEELEALKKNNTWRLVDLPKGKKVIGSKWIFKKKEATPGGEKARYKARLVAKGFTQIEGVDYHEVFAPVVKHCSVRVLMAIVAHCNLHLEQLDVRTAFLHGDLEETIYMKQPDGFAVDDRVCLLQKSLYGLKQSPRQWYRKFDDFLIKLNFKRCNYDDCVYTLNHGGEMLYLLLYVDDILIASSDRGMIGETKAKLADAFEMKELGEARRILGIDIKRERPGGNLFLSQECYLQKVISRYRMAESKIANTPVGQHLKLTKEQCPKTEEERKKMESVPFSNGIGSIMYGMVCTRPDVAHGVSVLSQFMVNPGPTHWEALKWMLRYIRGSLGTGLFFQNNFQGGGYIEGFVDSDFAGCMDTRKSRSGYVFTLFGTAVSWRSTLQSVVALSTTEAEYYALAEGVKEALWLKGLVRELGFDQKSVCVHCDSQSAIHLANHQIYHSRTKHIDVKLHFVRSIVESGDVQICKIASEENPADMLTKPLAKERFLFLLSRIGCLPVGH 2063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02851 2063 ProSitePatterns Serine/Threonine protein kinases active-site signature. 512 524 IPR008271 GO:0004672|GO:0006468
Vimu3g02851 2063 ProSiteProfiles Zinc finger CCHC-type profile. 956 972 IPR001878 GO:0003676|GO:0008270
Vimu3g02851 2063 Pfam Protein kinase domain 387 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02851 2063 Pfam gag-polypeptide of LTR copia-type 783 912 - -
Vimu3g02851 2063 SMART c2hcfinal6 956 972 IPR001878 GO:0003676|GO:0008270
Vimu3g02851 2063 FunFam Somatic embryogenesis receptor-like kinase 1 463 683 - -
Vimu3g02851 2063 SUPERFAMILY DNA/RNA polymerases 1572 2015 IPR043502 -
Vimu3g02851 2063 SUPERFAMILY L domain-like 106 257 - -
Vimu3g02851 2063 ProSitePatterns Protein kinases ATP-binding region signature. 392 414 IPR017441 GO:0005524
Vimu3g02851 2063 MobiDBLite consensus disorder prediction 928 950 - -
Vimu3g02851 2063 ProSiteProfiles Protein kinase domain profile. 386 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02851 2063 Gene3D Phosphorylase Kinase; domain 1 355 462 - -
Vimu3g02851 2063 SMART serkin_6 386 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02851 2063 Pfam Leucine rich repeat N-terminal domain 106 142 IPR013210 -
Vimu3g02851 2063 ProSiteProfiles Integrase catalytic domain profile. 1192 1358 IPR001584 GO:0015074
Vimu3g02851 2063 Pfam GAG-pre-integrase domain 1115 1181 IPR025724 -
Vimu3g02851 2063 SUPERFAMILY Retrovirus zinc finger-like domains 947 977 IPR036875 GO:0003676|GO:0008270
Vimu3g02851 2063 Pfam Integrase core domain 1194 1295 IPR001584 GO:0015074
Vimu3g02851 2063 SUPERFAMILY Protein kinase-like (PK-like) 365 664 IPR011009 -
Vimu3g02851 2063 FunFam Somatic embryogenesis receptor kinase 1 102 279 - -
Vimu3g02851 2063 Gene3D Ribonuclease Inhibitor 105 279 IPR032675 -
Vimu3g02851 2063 Gene3D - 1189 1367 IPR036397 GO:0003676
Vimu3g02851 2063 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1573 1815 IPR013103 -
Vimu3g02851 2063 CDD RNase_HI_RT_Ty1 1909 2047 - -
Vimu3g02851 2063 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 89 674 - -
Vimu3g02851 2063 Gene3D Transferase(Phosphotransferase) domain 1 463 683 - -
Vimu3g02851 2063 SUPERFAMILY Ribonuclease H-like 1194 1367 IPR012337 -
Vimu3g02851 2063 Gene3D - 932 985 - -
Vimu3g02851 2063 FunFam Somatic embryogenesis receptor kinase 1 355 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02851 Vimu-Chr3 42698640 42717201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02851 107 712 Receptor kinase-like Gene Family AT1G71830 73.642 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vimu3g02851 Pkinase 3.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02851 K13418 - bna:106351154 1062.37