Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02840 ATGGACGGCAACCCCACCACCACCTCTTCCTCCGCACCACCTCCCGAGAATTTCAATTTCTCGCCCCATAGCCCCTCCCCGATCACCCTCACTGCGGATCAGGTCAGCCACTGCACCCAAGCCATCAACCTTTTGAAGGACAAACTCCAGGCTCCTCACACCATCAGTCGGGAGTTTGGACACTTGCAGGCAAACAGAATAACGCCGAGTGAGATGAGGAGAAGATGCACCGTCGCTCTTGACGGCGTCAATTTGAACAAAAACCGATACACGGACGTTTTGCCATTTGACAATAACAGGGTTGTTCTCAGATCGAGTTCGGATTATAGACCTGCAGCGCAGGGGTATATCAATGCAAGCTTGGTCTCGACCTCCTCCTCTGGAAACGTGTCACGGTTTGTTGCCACACAAGGTCCACTTCCGCATACTTATGAAGATTTCTGGGAGATGATTATCCAATATCGCTGCCCTGCAATTATCATGCTAACAAGGTTGGTGGATAATTATAAGATGGTAAAGTGTGGAGATTATTTTCAAGCGGAGGATGGACCTAGAGAAGTTGGTAATATTTCTGTTATTGGTAAATGGGTGAACACTACTGAAACTTCATTGGTGCTGCGCCTTTTAGAGGTGAACCATAGAGAGGTAGAAGATGCTCCAATATCTGTTTTACATATTCAGTATCCCGAATGGCCTGACCACGGAGTTCCCAAAGATACATTAGCTGTGCGTGAAATTTTGAAAAGATTATACCATTTACCACCAAACCTTGGTCCAATAGTGGTCCACTGCAGTGCAGGTATTGGTAGAACTGGAACATATTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGTGATATGTCTGCTGTAGATATTGCTAACACAGTAGCTGTGTTCAGGGCCCAGCGTGTTGGAATGGTTCAGACCCAGGTATCAAGATTTGTTGATTTAATATATAAGTACGATTAA 975 0.4564 MDGNPTTTSSSAPPPENFNFSPHSPSPITLTADQVSHCTQAINLLKDKLQAPHTISREFGHLQANRITPSEMRRRCTVALDGVNLNKNRYTDVLPFDNNRVVLRSSSDYRPAAQGYINASLVSTSSSGNVSRFVATQGPLPHTYEDFWEMIIQYRCPAIIMLTRLVDNYKMVKCGDYFQAEDGPREVGNISVIGKWVNTTETSLVLRLLEVNHREVEDAPISVLHIQYPEWPDHGVPKDTLAVREILKRLYHLPPNLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSAVDIANTVAVFRAQRVGMVQTQVSRFVDLIYKYD 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02840 324 Pfam Protein-tyrosine phosphatase 84 312 IPR000242 GO:0004725|GO:0006470
Vimu3g02840 324 FunFam Tyrosine-protein phosphatase non-receptor type 12 32 322 - -
Vimu3g02840 324 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 47 312 - -
Vimu3g02840 324 ProSitePatterns Tyrosine specific protein phosphatases active site. 262 272 IPR016130 GO:0016311|GO:0016791
Vimu3g02840 324 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 312 IPR029021 -
Vimu3g02840 324 PRINTS Protein tyrosine phosphatase signature 259 277 IPR000242 GO:0004725|GO:0006470
Vimu3g02840 324 PRINTS Protein tyrosine phosphatase signature 221 238 IPR000242 GO:0004725|GO:0006470
Vimu3g02840 324 PRINTS Protein tyrosine phosphatase signature 133 153 IPR000242 GO:0004725|GO:0006470
Vimu3g02840 324 PRINTS Protein tyrosine phosphatase signature 115 122 IPR000242 GO:0004725|GO:0006470
Vimu3g02840 324 PRINTS Protein tyrosine phosphatase signature 292 307 IPR000242 GO:0004725|GO:0006470
Vimu3g02840 324 SMART ptp_7 222 323 IPR003595 -
Vimu3g02840 324 Gene3D Protein tyrosine phosphatase superfamily 28 323 IPR029021 -
Vimu3g02840 324 ProSiteProfiles PTP type protein phosphatase domain profile. 55 311 IPR000242 GO:0004725|GO:0006470
Vimu3g02840 324 SMART PTPc_3 54 322 IPR000242 GO:0004725|GO:0006470
Vimu3g02840 324 MobiDBLite consensus disorder prediction 1 26 - -
Vimu3g02840 324 CDD PTPc_plant_PTP1 116 312 - -
Vimu3g02840 324 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 244 316 IPR000387 GO:0016311|GO:0016791
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02840 33 316 Protein tyrosine phosphatase (PTP) family AT1G71860 67.958 9.61e-151 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02840 - - gmx:548044 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02840 3 42632244 42634891 Vimu3g02840 3 42632244 42634891 ECH