Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02833 ATGGACCCTCTCTCTGCCACCAAACACCACAACAATCTCTCCAAGCCTTCCTCCCTCCACATGGAGGCTCCGCCGCCGGAACCCAGTCCTCTCCGGAAGATCATGGTTGTGGCATCCATCGCCGCAGGGGTGCAGTTCGGCTGGGCCCTTCAGCTCTCCCTCCTCACCCCCTACGTCCAGTTGCTAGGAATTCCCCACACTTGGGCCGCCTTCATCTGGCTCTGCGGCCCAATCTCCGGCATGCTGGTCCAGCCCATCGTCGGCTACCACAGCGACCGCTGCACTTCCCGCTTCGGCCGCCGTCGCCCCTTCATCGCCGCCGGAGCCCTGGCCGTTGCCATCGCCGTCTTTCTCATAGGCTACGCCGCCGACCTTGGCCACATTCTCGGCGACTCCCTCACCAAGAAAACCCGCCCACGCGCCATTGCCATCTTCGTCGTCGGATTCTGGATCCTGGACGTGGCCAACAACATGCTCCAGGGCCCCTGCCGTGCCCTCCTCGCCGACCTCTCCGCCGGCGACCACCGCAAGACGCGCAACGCAAACGCCTTCTTCTCCTTCTTCATGGCCGTGGGCAACGTCCTGGGGTACGCCGCGGGGTCCTACAGCGGCCTCCACCACGTCTTCCCCTTCACCAAAACTAAAGCCTGCGACGTCTACTGCGCCAATCTGAAAAGCTGCTTCTTCCTATCCATAGCGCTCCTCCTCAGTCTGACCACCATCGCCCTCACTTACGTGAAGGAGAAAACGGTGCCGTCGGAAAAAAGCACCGCGAGCGTTGCGGAAGAAGATGGGTCCCACGGGGGCATGCCCTGTTTTGGGCAGTTATTCGGTGCGTTTCGGGAACTGAAGCGTCCCATGTGGATCCTTCTTTTGGTGACGTGTCTCAACTGGATTGCGTGGTTCCCCTTCCTTCTCTTCGACACCGACTGGATGGGCCATGAGGTCTACGGTGGAACCGTCGGAGAAGGAAAGGCCTACGATAGAGGCGTGCGCGCCGGTGCGTTAGGTCTCATGTTGAACTCTCTGGTCCTCGGAGCCACTTCCTTGGGCGTGGATGTCCTCGCGCGTGGAGTCGGAGGCGTCAAGAGGCTCTGGGGAATTGTCAACTTCCTTCTCGCTGTCTGTTTGGCCATGACCGTTTTGGTCACCAAGATGGCCCAGCATTCTCGCCAGTACACTGACCTCCCCGGTGGCATCCACGAGCCCCTGCCTCCTCCCTCCGCCGTCAAAGCCGGCGCGTTGGCCCTCTTTGCCGTCCTCGGAATCCCTCTGGCGATTACTTACAGCATACCCTTTGCTCTGGCGTCAATATTCTCCACCACCTCAGGGGCAGGACAAGGGTTATCTCTGGGAGTCCTCAATCTTGCTATCGTCATACCACAGATGGTGGTGTCTGTGACCAGTGGACCATGGGATGATCTATTTGGCGGCGGTAACTTGCCGGCGTTCGTGGTGGGTGCGGTGGCGGCTGCGGCCAGTGGCATTCTATCCATAATCCTGCTGCCATCTCCACCGCCGGATTTGGCGAAAGCTGCAACCGCAGCAGGGGGAGGGTTCCATTAA 1566 0.6047 MDPLSATKHHNNLSKPSSLHMEAPPPEPSPLRKIMVVASIAAGVQFGWALQLSLLTPYVQLLGIPHTWAAFIWLCGPISGMLVQPIVGYHSDRCTSRFGRRRPFIAAGALAVAIAVFLIGYAADLGHILGDSLTKKTRPRAIAIFVVGFWILDVANNMLQGPCRALLADLSAGDHRKTRNANAFFSFFMAVGNVLGYAAGSYSGLHHVFPFTKTKACDVYCANLKSCFFLSIALLLSLTTIALTYVKEKTVPSEKSTASVAEEDGSHGGMPCFGQLFGAFRELKRPMWILLLVTCLNWIAWFPFLLFDTDWMGHEVYGGTVGEGKAYDRGVRAGALGLMLNSLVLGATSLGVDVLARGVGGVKRLWGIVNFLLAVCLAMTVLVTKMAQHSRQYTDLPGGIHEPLPPPSAVKAGALALFAVLGIPLAITYSIPFALASIFSTTSGAGQGLSLGVLNLAIVIPQMVVSVTSGPWDDLFGGGNLPAFVVGAVAAAASGILSIILLPSPPPDLAKAATAAGGGFH 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02833 521 Gene3D MFS general substrate transporter like domains 28 514 IPR036259 -
Vimu3g02833 521 MobiDBLite consensus disorder prediction 1 26 - -
Vimu3g02833 521 FunFam Sucrose transport protein 28 502 - -
Vimu3g02833 521 PANTHER SUGAR TRANSPORTER 31 501 - -
Vimu3g02833 521 CDD MFS_SLC45_SUC 34 481 - -
Vimu3g02833 521 SUPERFAMILY MFS general substrate transporter 32 506 IPR036259 -
Vimu3g02833 521 Pfam MFS/sugar transport protein 42 300 - -
Vimu3g02833 521 NCBIfam sucrose/proton symporter 30 507 IPR005989 GO:0005886|GO:0008515|GO:0015770
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02833 Vimu-Chr3 42581400 42584158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02833 27 521 Sucrose Transporter Gene Family AT1G22710 70.319 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02833 K15378 - gmx:547679 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00115 8 4448082 4450593 Vimu3g02833 3 42581400 42584158 PCT
Vimu3g02833 3 42581400 42584158 Vimu8g00126 8 4665500 4668950 PCT