Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02830 ATGGGTACGTTGAATCTACTCTTGTTCTTCTCTTTGGTGAGTCTGTGTGCTATGGCTGCTGCGAAGGTGGTGCTTATTGGGAACAATATTACTCTGTCCTTCGATGATATTGAAGCTAATTTTGCTCCAACAGTCAAAGGTTCTGGAGAATATGGGGTCTTATATTTGGCAGAGCCACTTGATGCGTGTACAGACCTGACAAATAAAGTTGAACGACTTCCCAATGTGAGTTCACCTTTTGCTTTGGTCGTTAGAGGGGGATGTAGCTTTGAGGAGAAAGTCAGAAGGGCACAAAAGGCTGGCTTCCAAGCTGTAATTGTCTATGATAATGAAGAAGACGGTGTCTTGGTTGCAATGGCAGGAAATTCTGCTGGGATAAGAATACATGCAGTATTTGTATCTAAAGCTTCGGGTGAAATACTAAAGAAATATGCTGGGTGGCCTAATGTGGAAATATGGCTAATTCCAACTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCATTTATTTCCCTACTTGCAATGTCTGCAGTGCTGGCCACTTGTTTCTTTGTCCGCAGACATCGCATAAGAAGAGAAAGGCCTCGGGCTTCTCTTGTTCAGTTTCATGCTGCATGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGCAAGCGTGATGCAAGAACTGGCTTAACTGATCCACCTCCTTCAGAATCCACACCCTTGCTCTCATCAAGCCCAGCATCTATGGCGTCCTCTGTCTTATCTTCTGTGAGATCATCCCTAGCTTCATCTTCAGCAATACAAATTGCCCGGACAGCTTCACAGACCGCATCTGTTTCTCGTAACCACTCTATTGCCAGTACACCTTATGTTCATCCATCGACGTCACTTAGGTCCTCCTACCATCAATCCCCCTCCCTAAGCATGAGCCGAAGTTCAGTAGATCTTAGGAATGCATCCCAAAGATCTCTAGCTTCTCACTTGAATTCACCACATTCCATGGGATATCCTTCTTTGCCATCCCTTAACTCAAGGTACATGTCCCCGTATATTCCAAGTCCAAGCAATGCTTCAGTGAGTTATTTGGGTTCATCCAGTCATCAACAACATCCTCTCCGTTATAGTGAGTCGGCTGCAAGCTTCTCACCATTTGCATCGACACACTCCCTTCCGGAATGTTAA 1182 0.4459 MGTLNLLLFFSLVSLCAMAAAKVVLIGNNITLSFDDIEANFAPTVKGSGEYGVLYLAEPLDACTDLTNKVERLPNVSSPFALVVRGGCSFEEKVRRAQKAGFQAVIVYDNEEDGVLVAMAGNSAGIRIHAVFVSKASGEILKKYAGWPNVEIWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRASLVQFHAACVDSWLTSWRTFCPVCKRDARTGLTDPPPSESTPLLSSSPASMASSVLSSVRSSLASSSAIQIARTASQTASVSRNHSIASTPYVHPSTSLRSSYHQSPSLSMSRSSVDLRNASQRSLASHLNSPHSMGYPSLPSLNSRYMSPYIPSPSNASVSYLGSSSHQQHPLRYSESAASFSPFASTHSLPEC 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02830 393 MobiDBLite consensus disorder prediction 278 336 - -
Vimu3g02830 393 Pfam PA domain 74 141 IPR003137 -
Vimu3g02830 393 SUPERFAMILY PA domain 75 163 IPR046450 -
Vimu3g02830 393 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 21 155 - -
Vimu3g02830 393 CDD PA_C_RZF_like 19 162 IPR044744 -
Vimu3g02830 393 Gene3D - 17 154 - -
Vimu3g02830 393 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 54 145 - -
Vimu3g02830 393 SUPERFAMILY RING/U-box 203 234 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02830 20 392 C3H Transcription Factor Family AT1G22670 41.176 2.48e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02830 K15692 - gmx:100791248 598.586