Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02828 ATGCCAACACCAACACCAACCCCAAATGGAGGAGACTCCAATGTCCCTCCCAAACAATCCCGTGATATCCCTCCTTTTTTCTCTTCTTCTTATCCCATCACCCTTAAGTTCATGGACGTCGAATACCGCTTGAAGATAGACGACAAAAAAAACACCCCAGGGACCATCAAGACCTTCTTCACGCCCTGCGAATCATCGCCATCTCATCAAGGACCAAGCCCAGCCCTGCCGCAGGAGCGACTTATTTTAAAAGGTGTCACGGGAATAGCACACCCCGGGGAGATCTTAGCGGTACTTGGCCCATCGGGAAGCGGAAAATCGACGCTCTTAAACGCGCTCGCAGGGAGGCTCCATGGGAACGGTCTCACCGGAACAATCCTCGCCAACTCCAGCAAACTCAACAAATCGCTTCTTCGGAGAACTGGGTTCGTTACACAGGACGACATCCTCTACCCCCATCTCACTGTTCGGGAGACGCTAGTGTTCTGCGCTATGCTGCGCCTCCCTCGCACGCTGTCGCGCGCGGCCAAGGTCGCGGCGGCGGAGTCGGCCATCGCGGAGCTGGGGCTGAGGAAGTGCGAGCACACGATAATAGGAAACAGCTTCATCCGCGGCGTCTCCGGCGGGGAGCGGAAGCGCGTGAGCATCGCGCACGAGATGCTGGTGGACCCCTCGCTGCTGATACTGGACGAGCCCACCTCCGGTCTGGACTCGACGGCGGCGCACCGCCTCGTGGTGACGCTCGGGTCACTGGCGAAGAAGGGCAAAAGTGTAATCACATCGGTGCACCAACCTTCCAGCCGCGTGTACCAGATGTTCGATAAAGTTGTGTTGCTATCTGAAGGACAGTGTTTGTACTTCGGCAAAGGAAGCGACGCCATGCAGTACTTTCAGTCGGTTGGTTTCGCGCCGTCATTTCCGATGAATCCGGCGGATTTTCTGCTCGATCTCGCCAACGGTGTTAGCCACGTCGATGGTCAAAGTGAAAAAGATAGACCAAACATAAAGCAAAACCTAATCCATTCATACAGCACAATACTGGGTCCCAAGGTAAAAGCTGCCTGCATGGACAGTGCTAGTGTTCCTACAAAAAGCACAAATCCTTTGAGAAGCAGCTGTTCGAAAGAATGTAGACGTAGCAACAGGGTTAGCTTCTTTGATTGGTTTTACCAATTCAGTGTCCTATTCCAGAGGAGCCTCAAAGAAAGAAAACACGAATCCTTCAACACTCTGAGAGTCTCTCAAGTTATCGCTGCAGCACTATTAGCTGGTCTAATGTGGTGGCATTCAGATTACAGGAACATTCAAGATAGGCTTGGCCTACTCTTCTTCATTTCCATCTTCTGGGGAGTCTTCCCGTCTTTTAACTCGGTATTTGCATTCCCTCAAGAACGTGCCATCTTTATGAAAGAGCGAGCTTCTGGCATGTACAAGTTGTCCTCCTATTTCATGGCTCGAATTGTTGGAGACCTGCCCATGGAGCTTATCCTTCCCACTATTTTCCTAGTTATTACATATTGGATGGGTGGATTAAAGCCAGATTTTTGGGCTTTTGTGTTGACTTTGTTGGTTGTGCTTGGATACGTGATGGTGTCACAGGGTCTTGGACTTGCTTTAGGTGCAGCAATAATGGATGCCAAACAGGCTTCCACAGTGGCAGCAGTGACAATGCTTGCATTTGTGTTGACCGGTGGATACTATGTCCATCAGGTGCCATCTTGCATGGCTTGGATCAAATATATATCCACAACCTTCTACTGTTATAGACTGCTGACTAGAATCCAATATGAGGATGGCAAGAAGATATCTTATCTATTAGGCTGTGATCACGGTGATAAGGGTGGCTGCAGGTTTGTTGAAGAGGATGTGGTGGGCCAAATTGGCACTCTGGGCTGCATTGGGGTGCTGCTTTTCATGTTTGTGTTCTACAGATTATTGGCTTACCTTGCATTGAGGCGCATCAAGAGTTGA 1971 0.5033 MPTPTPTPNGGDSNVPPKQSRDIPPFFSSSYPITLKFMDVEYRLKIDDKKNTPGTIKTFFTPCESSPSHQGPSPALPQERLILKGVTGIAHPGEILAVLGPSGSGKSTLLNALAGRLHGNGLTGTILANSSKLNKSLLRRTGFVTQDDILYPHLTVRETLVFCAMLRLPRTLSRAAKVAAAESAIAELGLRKCEHTIIGNSFIRGVSGGERKRVSIAHEMLVDPSLLILDEPTSGLDSTAAHRLVVTLGSLAKKGKSVITSVHQPSSRVYQMFDKVVLLSEGQCLYFGKGSDAMQYFQSVGFAPSFPMNPADFLLDLANGVSHVDGQSEKDRPNIKQNLIHSYSTILGPKVKAACMDSASVPTKSTNPLRSSCSKECRRSNRVSFFDWFYQFSVLFQRSLKERKHESFNTLRVSQVIAAALLAGLMWWHSDYRNIQDRLGLLFFISIFWGVFPSFNSVFAFPQERAIFMKERASGMYKLSSYFMARIVGDLPMELILPTIFLVITYWMGGLKPDFWAFVLTLLVVLGYVMVSQGLGLALGAAIMDAKQASTVAAVTMLAFVLTGGYYVHQVPSCMAWIKYISTTFYCYRLLTRIQYEDGKKISYLLGCDHGDKGGCRFVEEDVVGQIGTLGCIGVLLFMFVFYRLLAYLALRRIKS 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02828 656 Pfam ABC transporter 83 234 IPR003439 GO:0005524
Vimu3g02828 656 Gene3D - 75 300 IPR027417 -
Vimu3g02828 656 FunFam ABC transporter G family member 22 73 300 - -
Vimu3g02828 656 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 35 306 IPR003439 GO:0005524
Vimu3g02828 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 299 IPR027417 -
Vimu3g02828 656 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 22 648 - -
Vimu3g02828 656 Pfam ABC-2 type transporter 263 357 IPR043926 GO:0140359
Vimu3g02828 656 Pfam ABC-2 type transporter 390 595 IPR013525 GO:0016020|GO:0140359
Vimu3g02828 656 SMART AAA_5 92 283 IPR003593 GO:0016887
Vimu3g02828 656 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02828 Vimu-Chr3 42523590 42529908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02828 93 342 Calmodulin-binding Proteins AT2G36910 26.378 3.63e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02828 K05681 - gmx:100812127 1127.08