Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02822 ATGGACCCTATGGTAATGATGAGAGAAACGAGGGAGATAGATGCGATGAAGAAAAAGTATGATGGCGAGTTGAAAGCCTTATGCGCTAAGAACACACTCACAAGGAAAGAAAGGGGAATGAGGGGTGAATGGAACATGCTTGATAATGGTCAAATTAGAGACAAGAATGGAATGATCGAAAGACCAAGCCATCAAGAAACCACAAAAGCACACTCACACAGGGAGGAACCTCTACAACTGGAGCCACAAGTGCACTACTTAACACTTAATTATGGCCTTGACAGTTGTTACAAGACACTAAAAATGTGGCATGGTGATCGTGGGAATTCAATTGTTAGGAGGGAGGAGGAAACTGGGAAAATGTCGAAAGATTGGAGCGCATCAAAGTGCAAAAATGTGTTGCCGCACGAGACCCCGGACCTAAATGAGCATTACATTGTGGGGCAGAAGGTGTTGGGAAAAGGGCGCTTGGCCACCACCTACGTGTGCACCCACAAGGAGACAGGGAAGACTTACGCGTGCAAAACCATCCCAAAGACGAAGCTTTTGTGCCAAGAGGAGTACGATGATGTATGGAGGGAGGTTCAGATCCTGCACCATTTGTCGGAGCACCCCAACGTGGCAAGGATACAGGGAAGCTACGAGGACAAGTTTGCGGTGCACCTTGTGATGGAGCTGTGTCGTGGGGGTGAGCTTTTCTATAGGATCACTCAGAAGGGGTATTTCAGCGAACGAGAGGCTGCCAAGTTGATGAAGACCATTGTTGGGGTGGTGGAAGTGTGCCATGCTCATGGGGTCATTCATAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATACCCTCGCCACGGATGCCACCCTCAAGGTTCCATTCATCGCTTATATTCAACTCGATTTTATAAGGCATGCCTTTCCGTATGAATTTGTCAATCAAAGACAAACCTTTAGTGATATAGTAGGAACTTGCTACTATATGGCCCCAGAGGTGTTGGGCAGACAGTCTGGACCAGAAGTGGACGTTTGGAGTGCCGGTGTTATTCTATACACCTTACTGAGAGGGCTTCCACCTTTCTGGGCAAGCGTTTTCAAACAGATTTTGCATGCAGAAGTTGATTTTGCATCTCATCCGTGGCCAAGTATATCAGGAAGTGCTAAAGATTTGATAAAACAGATGTTGGATAAGGACCCCAAGAAAAGAATTTCCGCTCATGAACTCATTAGAATGTCATGGCTTGGTAAAAGATCTAACGAATCTTGTATTCTCAGTGTTGCCCCGGACAAACCTCTGGATCCTGCTGTTTTGACGCGCCTAAAGCATTTCTCAACAATGAATAAACTTAAGAAGATGGCTATACGTGTCATAGTAGAAAGACTTTCGGAGGAGGAAATAGGTGGATTAAAAGAGATATTTAAAATGATTGACGAAGACAATAGCGGGACAATCACTTTTCAAGAACTCAAAGATGGTTTGAAAAGTGTGGGATGTGATCTCATGGAATCTGAAATTAGATCCCTTATGGATGCGGCTGATATAGACAACAACGGAACAATAGACTATGGTGAATTTCTCGCAGCTACAATGCACTTGAATAAGATGGAAAGAGAAGAGAATTTAGTTGCTGCTTTTTCCTATTTTGATAAAGATGGTAGTGGTTACATCACCATTGATGAGCTTCAACAGGCTTGTAAAGACTTCGGCCTTGGTGAGTTGCATCTGGATGAGATGATCAAAGAGATTGATCAAGACGATGATGGGAGAATTAATTATGGGGAGTTTGAAACAATGATGAGAAGGGGCGAACCAGGTGGTTGTAGAAGCAAAGTCATGAACAGCAATCATAAAACTTCATTATTTCCTGGTTTAGGAGTGAATGACTCATCCTAA 1884 0.439 MDPMVMMRETREIDAMKKKYDGELKALCAKNTLTRKERGMRGEWNMLDNGQIRDKNGMIERPSHQETTKAHSHREEPLQLEPQVHYLTLNYGLDSCYKTLKMWHGDRGNSIVRREEETGKMSKDWSASKCKNVLPHETPDLNEHYIVGQKVLGKGRLATTYVCTHKETGKTYACKTIPKTKLLCQEEYDDVWREVQILHHLSEHPNVARIQGSYEDKFAVHLVMELCRGGELFYRITQKGYFSEREAAKLMKTIVGVVEVCHAHGVIHRDLKPENFLFDTLATDATLKVPFIAYIQLDFIRHAFPYEFVNQRQTFSDIVGTCYYMAPEVLGRQSGPEVDVWSAGVILYTLLRGLPPFWASVFKQILHAEVDFASHPWPSISGSAKDLIKQMLDKDPKKRISAHELIRMSWLGKRSNESCILSVAPDKPLDPAVLTRLKHFSTMNKLKKMAIRVIVERLSEEEIGGLKEIFKMIDEDNSGTITFQELKDGLKSVGCDLMESEIRSLMDAADIDNNGTIDYGEFLAATMHLNKMEREENLVAAFSYFDKDGSGYITIDELQQACKDFGLGELHLDEMIKEIDQDDDGRINYGEFETMMRRGEPGGCRSKVMNSNHKTSLFPGLGVNDSS 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02822 627 ProSiteProfiles EF-hand calcium-binding domain profile. 461 496 IPR002048 GO:0005509
Vimu3g02822 627 CDD STKc_CAMK 144 410 - -
Vimu3g02822 627 ProSiteProfiles EF-hand calcium-binding domain profile. 569 602 IPR002048 GO:0005509
Vimu3g02822 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Vimu3g02822 627 ProSitePatterns EF-hand calcium-binding domain. 546 558 IPR018247 -
Vimu3g02822 627 ProSiteProfiles Protein kinase domain profile. 146 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02822 627 FunFam Calcium-dependent protein kinase 1 426 600 - -
Vimu3g02822 627 PANTHER SERINE/THREONINE-PROTEIN KINASE 133 592 - -
Vimu3g02822 627 Gene3D Transferase(Phosphotransferase) domain 1 232 425 - -
Vimu3g02822 627 Gene3D Phosphorylase Kinase; domain 1 147 231 - -
Vimu3g02822 627 SMART serkin_6 146 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02822 627 Pfam EF-hand domain pair 466 526 IPR002048 GO:0005509
Vimu3g02822 627 Pfam EF-hand domain pair 536 597 IPR002048 GO:0005509
Vimu3g02822 627 Gene3D - 426 599 - -
Vimu3g02822 627 FunFam Calcium-dependent protein kinase 1 148 231 - -
Vimu3g02822 627 ProSitePatterns EF-hand calcium-binding domain. 474 486 IPR018247 -
Vimu3g02822 627 CDD EFh 466 525 IPR002048 GO:0005509
Vimu3g02822 627 CDD EFh 538 597 IPR002048 GO:0005509
Vimu3g02822 627 ProSitePatterns EF-hand calcium-binding domain. 580 592 IPR018247 -
Vimu3g02822 627 FunFam Maternal embryonic leucine zipper kinase 137 453 - -
Vimu3g02822 627 SUPERFAMILY Protein kinase-like (PK-like) 149 418 IPR011009 -
Vimu3g02822 627 SMART efh_1 537 565 IPR002048 GO:0005509
Vimu3g02822 627 SMART efh_1 465 493 IPR002048 GO:0005509
Vimu3g02822 627 SMART efh_1 501 529 IPR002048 GO:0005509
Vimu3g02822 627 SMART efh_1 571 599 IPR002048 GO:0005509
Vimu3g02822 627 ProSiteProfiles EF-hand calcium-binding domain profile. 497 532 IPR002048 GO:0005509
Vimu3g02822 627 Pfam Protein kinase domain 149 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02822 627 ProSiteProfiles EF-hand calcium-binding domain profile. 533 568 IPR002048 GO:0005509
Vimu3g02822 627 SUPERFAMILY EF-hand 457 597 IPR011992 -
Vimu3g02822 627 ProSitePatterns EF-hand calcium-binding domain. 510 522 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02822 Vimu-Chr3 42466990 42473534 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02822 132 627 EF-hand Containing Proteins AT4G09570 64.000 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu3g02822 Pkinase 1.5e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02822 K13412 - gmx:100811596 753.051