Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02819 ATGCTGCTCAATTGTTGGGTCCAATACCAAAGTTATACATCATCATCATCATCATTACTTCAAAATATCTCATCCCTAGAGGAGAGATCATCAGTTGATATGGAATCATGTGTGCCTCCAGGATTCAGATTTCATCCAACAGAAGAGGAGCTTGTGGGGTACTATCTCAAGAGGAAGATAAACTCCCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCCTGGGACATACAAGATAGGTGCAAGCTAGGATATGAGCAACAGAATGAGTGGTACTTTTTCAGCCATAAAGATAAGAAGTATCCTACAGGAACAAGAACTAACAGGGCCACTGCTGCTGGATTCTGGAAAGCAACTGGAAGGGACAAGGCTGTTATGACCAAAAATAGAATCATAGGGATGAGAAAGACCTTGGTCTTCTACAAGGGACGTGCCCCTAATGGAAGGAAAACGGATTGGATTATGCATGAATATAGGCATCAAACCTCTGAACATGGTCCTCCACAGGCAAGTTTCTTCTCACTTCAATCATATCAACCACTAAGGCAAACATCTCATTTTGAGCAAATAGGGTTGTCAAGACTATCTTCACTACTCCAAACAGAAGAAGGATGGGTTGTGTGCCGAGCATTTCGAAAGCCTAGTCCAAGTCACAGGCAAGGTTATGAGGCATGGTGCAGTAGTAGTAGCCATCAACAACACTTTTACAAAGATCAAAGCTTTGCAAGACCCTTATCAATTGCTGATATTTTGAATGAAACAAATGTGCCTCATCACCCTGCAGAAGCTCCAAGCTTTAGTCTTCCTTTCAACTCAGATCAGCAGCACTTTATTCTGCCAAACCAAACTGTCATGGAGAAACAGCTGATTGAGCTTCCTCAGCTAGATAGTCCAACTGCAAGTTTTGCAATGAAGGACTGTAACCAACAACACCAGAATGGCCTCAGAAATGAGGAATACTGTAGTGATGAAAGGAGCAATAGCAGTGCGCAAGGTATCGATTGGAAGAGTTTGGACAACTTGTTCGGGTCACAATTGAGTGACACAGCTTATTTTTCACATCCAAACGTGCCCTTGATGATGCCCCATAATAACCATGATCAAGCTAGTCATATCCTAGGATGCTTCCCTGATTCATAG 1158 0.4206 MLLNCWVQYQSYTSSSSSLLQNISSLEERSSVDMESCVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIVEIDLYKMEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMTKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQASFFSLQSYQPLRQTSHFEQIGLSRLSSLLQTEEGWVVCRAFRKPSPSHRQGYEAWCSSSSHQQHFYKDQSFARPLSIADILNETNVPHHPAEAPSFSLPFNSDQQHFILPNQTVMEKQLIELPQLDSPTASFAMKDCNQQHQNGLRNEEYCSDERSNSSAQGIDWKSLDNLFGSQLSDTAYFSHPNVPLMMPHNNHDQASHILGCFPDS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02819 385 Gene3D NAC domain 47 222 IPR036093 GO:0003677|GO:0006355
Vimu3g02819 385 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 35 311 - -
Vimu3g02819 385 ProSiteProfiles NAC domain profile. 38 219 IPR003441 GO:0003677|GO:0006355
Vimu3g02819 385 FunFam Nac domain-containing protein 86 47 184 - -
Vimu3g02819 385 Pfam No apical meristem (NAM) protein 39 165 IPR003441 GO:0003677|GO:0006355
Vimu3g02819 385 SUPERFAMILY NAC domain 34 219 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02819 Vimu-Chr3 42448066 42451678 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02819 34 385 NAC Transcription Factor Family AT1G71930 50.541 7.26e-109 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu3g02819 NAM 9.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02819 - - var:108325420 667.151