Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02812 ATGAATCCAAAAGGAGGCCTATGTGCTAATAACTGCAAAACGTCCTCAGAACCCCCCTCTTTCTATGGTTTCGGAATTGAATCACCTTTCAATGAATTCCACCCTCCCCCTCTTCCAATCCAATCTGTACTTCCAGGTCAATCTAACACAGATGTTGGGATCCCTGACCAAGAAAATTGTCCACTAAGTGACTCATCAAATACCAGCAAGCTCCAAGATTGGAATCCAGGTGCAATGTTGAACAATCTTTCGTTCCTTGAAGAAAAGATTCATCAGCTCCGGGATCTAGTGCATTTAATTGTCAATAAAAAGTGCCAACCCTTTGGACAATCTCATGAACTAGTGACTCAGGAACAGCAGCTCGTCACAGCTGATCTTACATCAATTATTGTTCAATTGATCTCTACTGCTGGTAGTCTTCTCCCCTCTGTTAGGCACAACCTCACTACAAATCCCTTGGTTGGCCAGATTGACCAGTTTCATGGGATTAACCTCCCTTTTGGATCAGAACCAAGTAGTGGCATTAACCCACAAAATAATACTGGAAATAAACTGTTCGATAAGTCCACTCCGAATGATCTACCAAATACTTGTGAAATGGAGCAAAACTATAACATGGAAGAACACGAGCCAAAAGATGAAGAAGATGTGGATGAGGGAGAGAGTCTTCCACCCGGTTCCTATGAGATTTTACAGTTGGAAAAAGAAGAAATTCTTGCCCCTCACACACATTTCTGTACAATATGTGGGAAAGGATTCAAGAGGGATGCAAATCTCCGAATGCACATGCGTGGCCATGGTGATGAGTACAAAACCCCTGCAGCTCTTGCAAAACCGCATAAAGAAACCGGGTCTGAACCGAAGCTTATCAAGAGGTATTCCTGCCCCTATGCCGGCTGCAAGCGTAACAAGGATCACAAGAAATTCCAACCACTAAAGACTATTTTGTGTGTCAAAAACCACTACAAGAGAACGCACTGTGACAAGAGCTATACTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAACACTGTGGCAAGGATAAATGGCTCTGTTCTTGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTTTTCCAAGGCCATACACCGGCTATTCCTTTGGATGACACCAAAGCAGTGGCGGAGCCACCTGATCCCCAGAACCAAGAATGCAGCAATAAGGTAGGAAGTATGAACTTCTGTTATGGATCAAAGCCTTCAAGTGAAAATGTAGTTCAAAACATGATGGATATGAAAGGTAATATTGATGATCCTGTGAATTATTTCTCATCGCTGAACTTCGAAGGCTGTAACTTTGGGGCGTTTAGTGAATTCCCTCAAACTCCATTTGAAGATTCAGAAGGTTCTTTCTCTTTTCTCATGTCAGGATCCTTTAATTATGCTCCTAAATTTGGTGGCGGTGAATCAAGTTCCGACAATCTGTTGTGA 1494 0.425 MNPKGGLCANNCKTSSEPPSFYGFGIESPFNEFHPPPLPIQSVLPGQSNTDVGIPDQENCPLSDSSNTSKLQDWNPGAMLNNLSFLEEKIHQLRDLVHLIVNKKCQPFGQSHELVTQEQQLVTADLTSIIVQLISTAGSLLPSVRHNLTTNPLVGQIDQFHGINLPFGSEPSSGINPQNNTGNKLFDKSTPNDLPNTCEMEQNYNMEEHEPKDEEDVDEGESLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDTKAVAEPPDPQNQECSNKVGSMNFCYGSKPSSENVVQNMMDMKGNIDDPVNYFSSLNFEGCNFGAFSEFPQTPFEDSEGSFSFLMSGSFNYAPKFGGGESSSDNLL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02812 497 SMART c2h2final6 331 353 IPR013087 -
Vimu3g02812 497 SMART c2h2final6 293 326 IPR013087 -
Vimu3g02812 497 SMART c2h2final6 244 266 IPR013087 -
Vimu3g02812 497 ProSitePatterns Zinc finger C2H2 type domain signature. 246 266 IPR013087 -
Vimu3g02812 497 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 271 IPR013087 -
Vimu3g02812 497 MobiDBLite consensus disorder prediction 168 198 - -
Vimu3g02812 497 MobiDBLite consensus disorder prediction 169 198 - -
Vimu3g02812 497 Gene3D Classic Zinc Finger 228 298 - -
Vimu3g02812 497 MobiDBLite consensus disorder prediction 49 69 - -
Vimu3g02812 497 SUPERFAMILY beta-beta-alpha zinc fingers 242 269 IPR036236 -
Vimu3g02812 497 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 66 467 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02812 Vimu-Chr3 42366168 42367661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02812 212 497 C2H2 Transcription Factor Family AT1G34370 68.836 5.31e-138 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g02812 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02812 - - gmx:100170687 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02812 3 42366168 42367661 Vimu3g02812 3 42366168 42367661 ECH