Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02810 ATGCTAAGACAAGACCATAGGAGAAAAGGAGTTGTAGAAGATGGGAATGGCCTCCCCTTGATCCATTTGCTGCTCTCAACAGCAACTGCTGTTGATGACAACAACTTGGATTCATCCTTAGAGAATCTCACTGATTTGTACCAAACTGTTTCCCTAACAGGTGATTCGGTTCAGCGTGTGGTGGCTTATTTTGCTGATGGTTTGGCCGCAAGGCTTCTTACAAGGAAATCCCCATTCTACGACATGCTCATGGAGGAACCAACAACTGAGGAAGAGTTAAATGCATTCACAGATCTCTACAGGGTTTCACCTTACTACCAATTCGCTCATTTCACTGCAAACCAAGCTATCTTGGAGGCCTTTGAGAAAGAGGAAGAGAGGAACAACCGCGCTTTGCATGTCATTGACTTTGATGTCTCCTATGGCTTCCAGTGGCCCTCTCTCATTCAGTCTCTCTCGGAGAAGGCAACTACCGGCAACCGCATATCCCTCAGGATAACCGGATTCGGGAAGAATCTCAAAGAGCTTCAAGAAACTGAGTCTAGATTGGTTAGTTTCTCAAAGGGTTTTGTCAGTCTTGTGTTTGAATTCCAAGGGCTGCTAAGAGGCTCAAGGGTCATCAACCTAAGGAAGAAAAAGAATGAAACGGTGGCTGTCAACTTGGTTTCTTATTTGAACACTTTGAGTTGTTTTATGAAGATATCTGACACATTGGGATTTGTTCATTCCCTTAATCCCTCCATTGTTGTGGTGGTGGAGCAAGAGGGCAGCAGGAGTCCTAGGAGCTTCTTGTCAAGGTTCACAGACTCCTTGCACTACTTTGCAGCCATGTTTGATTCACTGGATGATTGTCTCCCACTAGAGAGTGCTGAGAGGTTGAGAATTGAGAAGAAGCTTCTGGGGAAAGAGATCAAAAGCATGCTCAACAATGATGTGGATGGTGTGGATTGTCCAAAGTATGAAAGGATGGAAACATGGAAAGCAAGAATGGAGAATCATGGATTTGTTGCAACCAAAATAAGCTCAAAGTCTATGATCCAAGCAAAACTGTTGCTGAAGATGAGGACCCATTATTGTCCTCTTCAGTTTGAGGAAGAAGGAGGTGGGGGTTTCAGGGTTTCCGAAAGAGATGAAGGAAGGGCTATCTCTTTAGGGTGGCAAAATAGGTTTCTGCTCACAGTCTCAGCATGGCAATCAGTCTGA 1203 0.4464 MLRQDHRRKGVVEDGNGLPLIHLLLSTATAVDDNNLDSSLENLTDLYQTVSLTGDSVQRVVAYFADGLAARLLTRKSPFYDMLMEEPTTEEELNAFTDLYRVSPYYQFAHFTANQAILEAFEKEEERNNRALHVIDFDVSYGFQWPSLIQSLSEKATTGNRISLRITGFGKNLKELQETESRLVSFSKGFVSLVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNTLSCFMKISDTLGFVHSLNPSIVVVVEQEGSRSPRSFLSRFTDSLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNNDVDGVDCPKYERMETWKARMENHGFVATKISSKSMIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDEGRAISLGWQNRFLLTVSAWQSV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02810 400 Coils Coil 290 310 - -
Vimu3g02810 400 Pfam GRAS domain family 20 398 IPR005202 -
Vimu3g02810 400 ProSiteProfiles GRAS family profile. 11 398 IPR005202 -
Vimu3g02810 400 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 19 393 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02810 Vimu-Chr3 42351727 42352929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02810 16 398 GRAS Transcription Factor Family AT1G14920 34.091 7.89e-56 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu3g02810 GRAS 9.6e-92 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02810 - - gmx:100809458 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00113 8 4314493 4315884 Vimu3g02810 3 42351727 42352929 PCT