Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02808 ATGGGGGAATCCAGTGTTGTTAGCACCAATAACCTCTTTACAACTTGTCCCAAAACATGTGATGAAGCTGCTCGTCTATCTGCAATGTTGCTTAGTACCACTGTGGTGTACCCTGCAGTTCTCAATGCCGCTATTCAGCTCAACTTGTTTGAGATCATAGCCAAGGGAACACCACACGGTTCATTCATGTCATCTCATGAAATTGCTTCTAAGCTCCCAAACCAGCACCCTGACTTGCCCAATAGGCTTGATCGCATGCTGCGTTTGCTTGCTAGTTATTCTGTTCTCACCAGTTCAACACGCACCACACAACACGGTGCCACTGAGACAGTTTATGGACTCTCACAAATTGGAGAATACTATGCCCCTGATGCAACTAGAGGCTACTTCGCTTCCTTTGCATCCTTTCTCTCTTGTCCTGCACTCTCACCACTTTGGTATATCATTTTAACTCTTGTGCATGTCGCTCTTATTATTACTGTATCATGGAAAGCTTACTTTGCACCAATAATCTCTTTTCTCAGGCTGAATTTCAAGGAAGCAGTGGTTGATGCAGACGTTGATTTGTTCAAGAAACTTCATGGGGTAACAACGTACCAGTACATGGAAAATAATCCAAAAATGAATGAAATTTTTAACAAGTCTATGGCGGATTTGTGCGTAACAGATATGAATAGAATACTTGACATATATACTGGATTTGAGGGAATATCAAGGTTGGTTGATGTAGGAGGTGGAAACGGACAAAACCTGAAAATGATAGTCTCCAAATACCCTTCAATTAAAGGAATTAATTTTGATCTGCCCCAAGTCATTGAGAATGCACCAGTGCTATCAGGGGTTGAGCATGTTGGAGGAGATATGTTTGCAAGAGTTCCAGAAGGTGACGCCATGACGCTAAAGGCTGTGTTGCACAATTGGTCTGATGAGAAGTGCGTAGAAATTTTGAGTAATTGTCGCAAAGCACTGTCTGGAGATGGGAAGGTGGTCGTTCTGGAGTTCATAATGCCAGAAAAACCAGAAGCAACTGAACAATCTCAGCTTGTTTCGAGTTTGGACAACCTTATGTTTATCACAGCAGGTGGAAAGGAAAGAACTGAGAAAGAGTACGAGAATTTGTGCAAGCTGGCTGGTTTTTCAAAATTTAATGTTGCTTGTCATGCCTCGTCTGGGCCGGGAGTGATGGAATTCTACAATTAG 1200 0.425 MGESSVVSTNNLFTTCPKTCDEAARLSAMLLSTTVVYPAVLNAAIQLNLFEIIAKGTPHGSFMSSHEIASKLPNQHPDLPNRLDRMLRLLASYSVLTSSTRTTQHGATETVYGLSQIGEYYAPDATRGYFASFASFLSCPALSPLWYIILTLVHVALIITVSWKAYFAPIISFLRLNFKEAVVDADVDLFKKLHGVTTYQYMENNPKMNEIFNKSMADLCVTDMNRILDIYTGFEGISRLVDVGGGNGQNLKMIVSKYPSIKGINFDLPQVIENAPVLSGVEHVGGDMFARVPEGDAMTLKAVLHNWSDEKCVEILSNCRKALSGDGKVVVLEFIMPEKPEATEQSQLVSSLDNLMFITAGGKERTEKEYENLCKLAGFSKFNVACHASSGPGVMEFYN 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02808 399 SUPERFAMILY "Winged helix" DNA-binding domain 22 124 IPR036390 -
Vimu3g02808 399 PIRSF O-mtase 153 399 IPR016461 GO:0008168
Vimu3g02808 399 PIRSF O-mtase 7 160 IPR016461 GO:0008168
Vimu3g02808 399 Gene3D - 5 121 IPR036388 -
Vimu3g02808 399 PANTHER O-METHYLTRANSFERASE 28 382 IPR016461 GO:0008168
Vimu3g02808 399 Pfam Dimerisation domain 40 91 IPR012967 GO:0046983
Vimu3g02808 399 Pfam O-methyltransferase domain 179 380 IPR001077 GO:0008171
Vimu3g02808 399 FunFam Caffeic acid 3-O-methyltransferase 8 121 - -
Vimu3g02808 399 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 176 387 IPR029063 -
Vimu3g02808 399 Gene3D Vaccinia Virus protein VP39 163 399 IPR029063 -
Vimu3g02808 399 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 399 IPR016461 GO:0008168
Vimu3g02808 399 FunFam Caffeic acid O-methyltransferase 156 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02808 Vimu-Chr3 42317662 42319258 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02808 18 388 Monolignol Biosynthesis Gene Families AT5G54160 42.742 1.11e-99 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02808 - - gmx:100798347 559.296