Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02787 ATGTACTACAAACTCAAAACCACCACCACAACAACTTCTTCACCAATCCCAATCCATCATCCCACTATGCTCTCAAACTCTCCTCCATCTTCATCTTCTTCACCTCCCTCACACTCTCCCACACCTTTCCCTTCACCCTCTCAGGGATCTCCTGCTCCTGCTCCGCCTTCTCCGCCGCCGCCTGTGGTCGTTAGCCCCTGTGCTGCCTGCAAGATTCTCCGCCGCAGGTGCGTCGAGAAGTGTGTCCTGGCTCCCTATTTCCCTCCCACCGATCCCCTCAAATTCACCATTGCTCACAGAGTCTTTGGAGCAAGCAACATCATCAAGTTCTTGCAGGAAGATGCATTGATTGATTTTCAGGAGTTACCAGAGTCCCAGAGAGCAGATGCTGTGAGCAGCATGGTTTATGAGGCAAATGCTAGGATCAGAGACCCAGTTTATGGGTGTGCAGGAGCAATATGCCAACTTCAGAAGCAAGTGAGCGAGCTTCAAGCACAGTTGGCGAAAGCACAGGCTGAGGTAGTGAACATGCAGTGCCAACAAGCGAATTTGGTGGCTCTAATATGCATGGAAATGAGTGAATCGCAGGAGCAGCAGATGGTGCAGCCTCAAGCTCACATTGACATGAGCTGCTTCATAGAGGACAACAGTTTTGGAAGTGCTTGGGAGCCTCTTTGGACATGA 684 0.5088 MYYKLKTTTTTTSSPIPIHHPTMLSNSPPSSSSSPPSHSPTPFPSPSQGSPAPAPPSPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQEDALIDFQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALICMEMSESQEQQMVQPQAHIDMSCFIEDNSFGSAWEPLWT 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02787 227 MobiDBLite consensus disorder prediction 1 58 - -
Vimu3g02787 227 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 65 198 - -
Vimu3g02787 227 MobiDBLite consensus disorder prediction 33 58 - -
Vimu3g02787 227 MobiDBLite consensus disorder prediction 1 32 - -
Vimu3g02787 227 ProSiteProfiles LOB domain profile. 65 174 IPR004883 -
Vimu3g02787 227 Pfam Lateral organ boundaries (LOB) domain 66 171 IPR004883 -
Vimu3g02787 227 Coils Coil 153 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02787 Vimu-Chr3 42192440 42193709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02787 62 227 AS2 family AT1G07900 67.836 4.08e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu3g02787 LOB 3e-38 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02787 3 42192440 42193709 Vimu3g02787 3 42192440 42193709 ECH