Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02784 ATGGGGAGGAAAGGGTGGTTTTATTCAGTGAAGAAAGTTTTCTTTTCTGATTCCAAGAAGGAACAGAAACATTCTTCTCATCATCAGCAACAACATCATCCTAAACCACCAAAGTTAGGATGTTTTGGGGCTTATCACCCCGATGATCTAGAAGGAGCACCAATTGCTGTTGTTCCCTCACTTCCCCCAAGAAAAGACACCACACCAAGAAGTTTGCCAGAGAATGAACAGAACAACCAAGCCTTTTCTTTGGTTTTGGCTACTGCCGTGGCTGCAGGGGCTGCTGTAGCCGCTGCTGCAGAGGTTTCTCGTCCCTCAACCACGAGTCGTCAAAATGTAAAATTGAATGATGACATGGCTGCTACCAGGATTCAAACAGCCTACCGTGGATATTTGGCAAGAAGATCCTTGCGAGGCTTGAGAGGTTTGGCGAGGTTGAGAACATTGGTGCAAGGGCAATCTGTTCAAAGGCAAGCAGCTACTACCTTGCAATGCATGCAAACTCTTTCACGGTTGCAGTCTCAGATTCGTGCAAGGAAGGTCAGAATGTCTGAGGAGAATCAGACTCTTAACCGGCAACTGCTGCAGAAACGTGAAAAGGAATTGGACAAGTTGCAAGCTAACCAAATTGGAGAAAAATGGGACGATAGCTCGAAATCAAAGGAGCAAGTTGAGGCACAGGTGTTGAACAGGCAGATAGCAGCTATGAGAAGACAGAAGGCCTTGGCATATGCATCAACACATCAGCAAACACGGAGGAACTCTTCAAAATCTGCCACAAATGCTACATTTATGGATCCAAACAATCCCCACTGGGGCTGGAACTGGCTAGAGCGATGGATGGCTACTAGGCCATGGGAAGATCAAAACACTACCTACCACATTGGTCATGCATCTGCCAAGAGTGCTGCAAAAAACACCATGTCAGTTGGTGAAATCACAAAATTATACTCTCTCCGGGACCAGAACAATGATGTCAAAACACCCCCAGAAAACCAAAATTCAAAATCCCCTTCAAAAAGAGCCCCAAGGGTCTCGCTAGCCAATGTAACAAGGCCAAAGGTACCAAGTGGTTCATGGGGTGGTGAAGGTGATTCAAAATCCATGTTCTACAAAGCCCATGAAAACAATCGCAGGCACAGCATTGGAGTGTCACCACTGAATGATGACGAGATCCCTTCAAGCTCTTCACCTGCTTTCCCAAGTCACACAACACCATCCACCCAGGTTGGAAAGGCCAAGCCATCATCCAAAGGGAGAAGTGCATCATTTGCTGCACAAAGAAATACAACACCTGAAAAAGCAGCTTCTGCTCCTTTAAAGAAGAGACTCTCTTTCCCTTCTTCTCCAGCCGGTGCAAGAAGGTATTCTGTTTCAACCAGACCTGGAAATGTGGCTTCCAACAAGAGTGTTGCTAATGGTTCCACCCCAGAAGATAAAATGAGAGTGAGAAGGTAG 1458 0.4623 MGRKGWFYSVKKVFFSDSKKEQKHSSHHQQQHHPKPPKLGCFGAYHPDDLEGAPIAVVPSLPPRKDTTPRSLPENEQNNQAFSLVLATAVAAGAAVAAAAEVSRPSTTSRQNVKLNDDMAATRIQTAYRGYLARRSLRGLRGLARLRTLVQGQSVQRQAATTLQCMQTLSRLQSQIRARKVRMSEENQTLNRQLLQKREKELDKLQANQIGEKWDDSSKSKEQVEAQVLNRQIAAMRRQKALAYASTHQQTRRNSSKSATNATFMDPNNPHWGWNWLERWMATRPWEDQNTTYHIGHASAKSAAKNTMSVGEITKLYSLRDQNNDVKTPPENQNSKSPSKRAPRVSLANVTRPKVPSGSWGGEGDSKSMFYKAHENNRRHSIGVSPLNDDEIPSSSSPAFPSHTTPSTQVGKAKPSSKGRSASFAAQRNTTPEKAASAPLKKRLSFPSSPAGARRYSVSTRPGNVASNKSVANGSTPEDKMRVRR 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02784 485 MobiDBLite consensus disorder prediction 242 268 - -
Vimu3g02784 485 MobiDBLite consensus disorder prediction 18 45 - -
Vimu3g02784 485 ProSiteProfiles IQ motif profile. 117 145 IPR000048 GO:0005515
Vimu3g02784 485 PANTHER IQ-DOMAIN 5-RELATED 1 448 - -
Vimu3g02784 485 MobiDBLite consensus disorder prediction 380 485 - -
Vimu3g02784 485 MobiDBLite consensus disorder prediction 388 434 - -
Vimu3g02784 485 Pfam IQ calmodulin-binding motif 119 138 IPR000048 GO:0005515
Vimu3g02784 485 Coils Coil 219 239 - -
Vimu3g02784 485 MobiDBLite consensus disorder prediction 243 268 - -
Vimu3g02784 485 MobiDBLite consensus disorder prediction 452 475 - -
Vimu3g02784 485 MobiDBLite consensus disorder prediction 319 344 - -
Vimu3g02784 485 Coils Coil 180 200 - -
Vimu3g02784 485 MobiDBLite consensus disorder prediction 319 366 - -
Vimu3g02784 485 SMART iq_5 116 138 IPR000048 GO:0005515
Vimu3g02784 485 MobiDBLite consensus disorder prediction 56 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02784 Vimu-Chr3 42167745 42171175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02784 1 475 IQD Protein Family AT5G03040 40.452 8.79e-87 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02784 - - vun:114190307 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02784 3 42167745 42171175 Vimu3g02784 3 42167745 42171175 ECH