Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02780 ATGGGTAAAGAGAAGGTTCATATTAACATTGTGGTGATTGGCCATGTGGACTCTGGAAAGTCTACTACCACCGGTCACCTCATTTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAGAGATTCGAGAAAGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCTGAGCGTGAAAGAGGAATCACCATTGACATTGCTCTCTGGAAATTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCCCCCGGACACAGGGATTTCATTAAGAATATGATTACCGGGACATCCCAAGCTGACTGTGCTGTTCTTATCATTGATTCCACAACTGGTGGTTTTGAAGCTGGTATCTCGAAGGATGGACAGACTCGTGAACATGCTCTTCTTGCTTTTACTCTTGGTGTTAAGCAGATGATTTGCTGCTGTAACAAGATGGATGCCACTACACCTAAGTACTCCAAGGCAAGGTATGATGAAATTGTGAAGGAAGTTTCTTCGTATTTGAAGAAGGTCGGTTACAATCCTGACAAGATCCCTTTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATTGAGAGGTCTACCAACCTTGACTGGTATAAGGGTCCAACTCTTCTGGAGGCTCTTGATCAGATCAATGAGCCAAAGAGGCCATCAGACAAGCCTCTTAGGTTGCCCCTTCAGGATGTGTACAAGATTGGAGGAATTGGAACTGTGCCTGTCGGACGTGTTGAAACTGGTGTCATCAAACCTGGAATGGTTGTTACCTTTGCACCCACTGGACTGACAACTGAAGTTAAGTCCGTGGAGATGCACCACGAAGCACTCACCGAGGCTCTTCCCGGTGACAATGTGGGATTCAACGTGAAGAATGTTGCTGTGAAGGATCTGAAACGTGGTTTCGTTGCCTCAAACTCCAAGGATGACCCTGCGAAGGAGGCTGCAAATTTCACGTCCCAAGTTATCATCATGAATCACCCTGGGCAGATTGGAAATGGCTATGCACCTGTTCTTGATTGCCACACCTCCCACATTGCCGTGAAGTTTGCCGAACTCGTGACCAAGATTGACAGGCGGTCTGGTAAAGAGCTGGAGAAGGAGCCTAAATTCTTGAAGAACGGAGATGCTGGTTTTGTGAAGATGATTCCCACAAAGCCCATGGTGGTTGAAACCTTCTCTGAATATCCTCCACTTGGTCGTTTTGCTGTGAGAGACATGCGTCAGACTGTGGCTGTTGGTGTCATCAAGAGCGTGGAGAAGAAGGACCCTACTGGAGCTAAGGTTACCAAGGCTGCGCAGAAGAAGAAGTAA 1344 0.4688 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAAQKKK 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02780 447 Gene3D Translation factors 323 430 - -
Vimu3g02780 447 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Vimu3g02780 447 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Vimu3g02780 447 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Vimu3g02780 447 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Vimu3g02780 447 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Vimu3g02780 447 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Vimu3g02780 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Vimu3g02780 447 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Vimu3g02780 447 NCBIfam translation elongation factor EF-1 subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Vimu3g02780 447 CDD EF1_alpha_II 230 320 - -
Vimu3g02780 447 FunFam Elongation factor 1-alpha 229 316 - -
Vimu3g02780 447 Pfam Elongation factor Tu GTP binding domain 6 222 IPR000795 GO:0003924|GO:0005525
Vimu3g02780 447 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Vimu3g02780 447 Gene3D - 1 226 IPR027417 -
Vimu3g02780 447 Gene3D Translation factors 229 316 - -
Vimu3g02780 447 Coils Coil 440 447 - -
Vimu3g02780 447 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Vimu3g02780 447 PANTHER TRANSLATION FACTOR 4 433 - -
Vimu3g02780 447 CDD EF1_alpha 9 227 - -
Vimu3g02780 447 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Vimu3g02780 447 CDD EF1_alpha_III 323 426 - -
Vimu3g02780 447 FunFam Elongation factor 1-alpha 323 430 - -
Vimu3g02780 447 FunFam Elongation factor 1-alpha 1 226 - -
Vimu3g02780 447 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Vimu3g02780 447 SUPERFAMILY Translation proteins 231 321 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02780 Vimu-Chr3 42156530 42157980 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02780 1 446 Eukaryotic Initiation Factors Gene Family AT5G60390 96.637 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02780 K03231 - gmx:100801611 893.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02780 3 42156530 42157980 Vimu3g02780 3 42156530 42157980 ECH
Vimu3g02780 3 42156530 42157980 Vimu8g00491 8 11086656 11088104 PCT