Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02773 ATGCCGCCTGAACCATTGCCTTGGGATCGAAAGGACTTCTTCAAGGAGAGGAAGCACGAGAGGTCTGAGTCGCTTGGGTCAGTCGCCAGATGGAGGGACTCCTCGCACCACCGCGACTTCAATCGCTGGGGATCCGCCGATTTTCGCAGACCGCCAGGGCATGGTAAGCAGGGCGGTTGGCACCTGTTTTCTGAGGACTCAGGTCATGGGTATGCAATTTCTCGGTCAAGCAGTGACAAGATCCTGGAGGAAGATAGTCGGCCCTCGATTTCACGAGGTGATGGGAAGTACGGCAGGAGCAGTAGGGAAAATAGAGGACCCTTTGGTCAGAGAGATTGGAGAGGGCATTCGTGGGAGCCCTCCAATGGTACCGTGAATTTACCCAGAAGGCCGCAGGATATGAACAATGACCAGAGGGCTGTGGACGACGCCCTAGGATACTCTTCTCATCCACATTCCGATTTCGTGAACTCTTGGGATCAGCATCATCTTAAAGACCAGCATGAGAAGATAGGTAGTGTCAATGGGTTGGGAACTGGCTCCAGAAGTGACAGAGAGAACTCTCTGGGTGACTGGAAGCCGCTTAAATGGACCCGTTCTGGAAGCTTATCTTCTCGAGGCTCGGGTTTTAGTCACTCAAGTAGCTCAAGGAGCATGGGAGCAGCGGATTCGCATGAAGAGAAGGCCGAGTTGCAACAGAAAAGTGCAGCTGCTAATGAGTCACATTCAGGGGAAGCAGCTGCTTGTGCGACATCTTCTGTGCCATCTGAAGATACGGCTTCTAGAAAAAAGCCAAGGCTGAATTGGGGCGAGGGACTTGCAAAGTATGAGAAGAAAAAAGTCGAGGTTCCTGATGCAAGTGCAAACAAAGATGGTCCTGTCTTGTCTGCTAGCATCACCGAACCTTGCAATTCCCTCAGTACCAGCTTGGTTGACAAAAGTCCAAAAGTTACAGGGTTTTCTGAATGTGCATCTCCTGCAACTCCATCTTCTGTCGCCTGCAGTTCCTCTCCTGGTATGGATGATAAATTATTCGGAAAGACTACAAATGTAGACAATGATGTTAGTAATTTGACTTGTTCACCCGCTCCTTTGTCTGAAAATAATTTGCAGAGGTTTTCCTTTAACTTAGAGAAATTTGATATTGGCTCCTTGAAAAATTTGGGTTCTTCAATTATTGAGCTGGTACAGTCTGATGATCCAACTTCTGTAGATTCTGGTCCAATGAGGTCCAATGCAATTAATAAGTTACTGATATGGAAAGCTGACATTTCAAAGGTGTTGGAGATGACAGAATCTGAAATAGATTTACTTGAAAATGAACTGAAGTCACTGAAATCTGAATCTGGTGTTACATGTCCATTTGCGGTATCCCTGGCCTCCCAGATGGTAGGTAGTGGTGAAAAATCCTTTGAAGGACATGTTGGAGTCTCTGATCAGGTCACCCGGCCGGTACCGTTGAATATTGTTGAAGATGCCAATACAGAGAAGGTGCCATTTTCAACTAATTTACATAGTGTTCATGAAAATGTAAAGGAAGAGGATATTGATAGTCCTGGAACAGCTACTTCTAAATTTGTTGAGCCTCTTCCTGTTTCTTGTGGTGCTGGAGGAGGATATGTTAATTTCTCCCAGGACTTGGATTCTGTTCCATCTGCAGCTGTGAAATACTTAATGCCCTGTACTGCTAGGAAAGATGTTATTGTACCTTGTGTTGATGGCAAGACTTCTTTGGAGGTAAGTGATAGCATGGATATTTTATGTGGTACAATTATTTCTTCCAATAAAGAATCTGCCAACAAAGCTAGTGAGGTGTTTGATAATTTATTGCCCAAAGATTGTTGTAAGATTGGGAGGATGGGAACCAGCAGTGACACATGCAATCAGACCTTGATTAGGGAAAAGTTTGTTGAGAAAAAGCGATTTGCTAGGTTTAAGGAGAGAGTTATTGCACTTAAGTTCAGAGCTTTGCATCACTTGTGGAAAGAAGATATGCGTTTACTTTCTATCAGGAAATGCCGACCAAAATCTCACAAAAAGAATGAACTAAGTGTGCGAACTACCTGTAATGGTAACCAGAAGAACCGATCATCCATTCGATCACGTTTTCCCTTTCCTGCAGGAAATCATCTGAGCTTGGTTCCAACATCAGAGATTATTAATTTTACAAGCAAACTGCTTTCAGAATCTCAAGTTAAAGTGCAGAGGAACACTTTGAAGATGCCGTCATTAATTTTGGATGAAAAAGAGAAGACGATTTCAAAGTTTGTAACTAGTAATGGGCTGGTTGAAGATCCATTGGCTATTGAGAAGGAAAGGTCTTTGATTAATCCTTGGACACCACAAGAGAGAGAAATTTTCTTGGAGAAATTTGCTGTCTTTGGAAAAAATTTTAGGAAAATTGCTTCTTTTCTTGACCACAAGACAACTGCTGACTGTGTTGAATTCTACTACAAAAATCATAAATCTGATTATTTTGAGAAACTTAAGAAGCAAGATGTTGGTAAGCTGGGGAAGTCATTTTCAGCTAAAACTGACTTGGTGGCATCAGGTAAAAAATGGAATCGTGAATTGAATGCTGCTTCCCTTGAAATTTTGAGTGCAGCTTCGCTGATGGCAGGTGGCATTGCAGGTAATAAAAAAATCCGTGCAGGAAGCTCACTTTTGGGTGGATATGGTAAAGCAAAGACGTCGAGGGTTGAAGACTTCATTGAGAAATCAGGCAGTTTTGACATTCTTGGGGATGAAAGAGAGACTGCTGCTGCAGCTGATGTATTGGCAGGTATATGTGGTTCTCTTTCATCCGAGGCTATTGGTTCCTGCATAACAAGTTCTGTCGATGCAGTAGAAGGTAGCAGGGATAGGAAGTTCCTGAAAGTAAACCCTTTATACAAGCTGCCCTTGACACCAGATGTTACTCAGGATGCTGATGATGAGACTTGTTCAGATGAGAGCTGTGGTGAAATGGATCCTACAGACTGGACTGATGATGAGAAGGCTGCCTTTCTTCAGGCTGTATCTTCTTTTGGGAAAGATTTTGCCAAAATAGCTCGGTGTGTTAGGACAAGGTCCCAAGAACAGTGCAAAGTTTTCTTCAGCAAAGGCCGCAAATGTCTTGGATTAGATCTCATGCGCCCAATACCTGAAAATGTTGGATCCCCAGTGAACGATGATGCAAATGGGGGTGAGAGTGACACTGATGATGCATGTGTCGTGGAGACAGGCTCAGTGGTTGGAACTGAAAAGTCTGGCACTAAAACAGATGAGGACCTGCCTTTGTATGGAACAAAAACATTCAATGATGAGTCCAATCCTGTGCAAGCTAGGAACCTGTCAGCAGAATTAAATGAATCAAAGGGGACTGATGGGACAGAAGTTGATATTGAAGATGCAAATGTGGTTTCTGATGCATGTGCAATTGATATTGATTCTAAACTGGGCTGTGATGGTAGTATATTTGCCTTGTGTGGTTCTGTCAGTGGACAAACAACTGTAATCATGTCGGATAGAACAGAAATTAGAAGAGATAAAGCTAATAAATTGATATCTGTTCCAGATACAAGTAGTGAACCATGCGAGATTAATTCTTTTGTTGAGGATAGAATGGTGGTTTCCGAGGTCTCTTCGGGAAGACCTGGTAATGAATTGGAGAGGCAGAGAGTGTCTTCACCCCGATGTCTTGATGATAGAGATAGTAAACAGGAAGCTGATTCGGGTGTCATAGTTGATTTGAAAAGCCCTGTGCACATTCTAAGCACTATTGTAAATGCTCCCGTCTCGTCATTTGGAAATTCCTCTTCAGGATTGAGTTCTAGTACTGAAAATAAGCATGTACCCATTGGACAGCCTCATACCTCTCCGTTGTCTGTGGACGAACATCAAGCATCTTCAAATTCATTTTTACAAAATCCTGTTGCTTCTGATATTCAGTGTGAGAAAACAGCTAGCCAAGATCGACTATCTTCTACCTGTGATATTCAGGTTAGCAACGATGAGCAGCCCCCTATTACTGGGAATTCATCAGACCATGTTGATACCGGAAGTATTCTTCAGGGCTATCCCTTGCAAGCTCCCATTAAGAAGGAGATGAATGATGATATGAACTGTAGCAGTTCAGCAGCAGAATTGCATCTTTTGTCCCAGAAGATTGAACAGCCTGATGATCAAACCAAAAAATTACAGTCGTTGGATTCAGATAAAACATCCAGAAATGGTGATGTCAAACTTTTTGGGAAGATACTAACCAATCCTTCATCAGCACAGAAACCTAATGTGGGTGCTAAAGGTAGTGAAGAAAATGGTACCCTCCATCATAAGTTGAGCAAACCTTCTGGTGTGAAATTTGGCGGACATAATGCAGATGGGAATTTGAAAATTTTGAAGTTTGACTGTAATGATTATGTTGGCCTTGAAAATGTTCCCATGAGGAGTTATGGTTATTGGGATGGGAACAGAATACAGACTGGTCTCTCTTCTTTGCCAGATTCTGCTATCTTGCTAGCAAAGTATCCTGCAGCCTTCAGTAATTATCCCACATCTTCTGCCAAATTGGAGCAACCGTCATTGCAAACATTTTCCAAGAATAATAATGAACGGCTCCTAAATGGAAGTAATGCCGTGATTGATTATCAGATGTTTAGAAGGGATGGTCAGAAAGTGCAGCCATTTATGGTAGATGTGAAGCACTGCCAGGATGTATTCTCTGAGATGCAGAGAAGAAATGGTTTTGAAACAATCTCAAGTTTACAGCAGCAGAGCAGGGGAGTGATGGGAATGAATGGGGTTGGAAGACCGGGGATTCTTGTAGGAGGATCGTGCAGTGGTGTCTCAGATCCAGTGGCAGCAATCAAAATGCATTATTCCAATTCTGACAAGTATGGTGGTCAGTCTGGGAGTATTGCGAGAGAAGATGAATCATGGGGAGGGAAGGGGGACTGA 4938 0.4305 MPPEPLPWDRKDFFKERKHERSESLGSVARWRDSSHHRDFNRWGSADFRRPPGHGKQGGWHLFSEDSGHGYAISRSSSDKILEEDSRPSISRGDGKYGRSSRENRGPFGQRDWRGHSWEPSNGTVNLPRRPQDMNNDQRAVDDALGYSSHPHSDFVNSWDQHHLKDQHEKIGSVNGLGTGSRSDRENSLGDWKPLKWTRSGSLSSRGSGFSHSSSSRSMGAADSHEEKAELQQKSAAANESHSGEAAACATSSVPSEDTASRKKPRLNWGEGLAKYEKKKVEVPDASANKDGPVLSASITEPCNSLSTSLVDKSPKVTGFSECASPATPSSVACSSSPGMDDKLFGKTTNVDNDVSNLTCSPAPLSENNLQRFSFNLEKFDIGSLKNLGSSIIELVQSDDPTSVDSGPMRSNAINKLLIWKADISKVLEMTESEIDLLENELKSLKSESGVTCPFAVSLASQMVGSGEKSFEGHVGVSDQVTRPVPLNIVEDANTEKVPFSTNLHSVHENVKEEDIDSPGTATSKFVEPLPVSCGAGGGYVNFSQDLDSVPSAAVKYLMPCTARKDVIVPCVDGKTSLEVSDSMDILCGTIISSNKESANKASEVFDNLLPKDCCKIGRMGTSSDTCNQTLIREKFVEKKRFARFKERVIALKFRALHHLWKEDMRLLSIRKCRPKSHKKNELSVRTTCNGNQKNRSSIRSRFPFPAGNHLSLVPTSEIINFTSKLLSESQVKVQRNTLKMPSLILDEKEKTISKFVTSNGLVEDPLAIEKERSLINPWTPQEREIFLEKFAVFGKNFRKIASFLDHKTTADCVEFYYKNHKSDYFEKLKKQDVGKLGKSFSAKTDLVASGKKWNRELNAASLEILSAASLMAGGIAGNKKIRAGSSLLGGYGKAKTSRVEDFIEKSGSFDILGDERETAAAADVLAGICGSLSSEAIGSCITSSVDAVEGSRDRKFLKVNPLYKLPLTPDVTQDADDETCSDESCGEMDPTDWTDDEKAAFLQAVSSFGKDFAKIARCVRTRSQEQCKVFFSKGRKCLGLDLMRPIPENVGSPVNDDANGGESDTDDACVVETGSVVGTEKSGTKTDEDLPLYGTKTFNDESNPVQARNLSAELNESKGTDGTEVDIEDANVVSDACAIDIDSKLGCDGSIFALCGSVSGQTTVIMSDRTEIRRDKANKLISVPDTSSEPCEINSFVEDRMVVSEVSSGRPGNELERQRVSSPRCLDDRDSKQEADSGVIVDLKSPVHILSTIVNAPVSSFGNSSSGLSSSTENKHVPIGQPHTSPLSVDEHQASSNSFLQNPVASDIQCEKTASQDRLSSTCDIQVSNDEQPPITGNSSDHVDTGSILQGYPLQAPIKKEMNDDMNCSSSAAELHLLSQKIEQPDDQTKKLQSLDSDKTSRNGDVKLFGKILTNPSSAQKPNVGAKGSEENGTLHHKLSKPSGVKFGGHNADGNLKILKFDCNDYVGLENVPMRSYGYWDGNRIQTGLSSLPDSAILLAKYPAAFSNYPTSSAKLEQPSLQTFSKNNNERLLNGSNAVIDYQMFRRDGQKVQPFMVDVKHCQDVFSEMQRRNGFETISSLQQQSRGVMGMNGVGRPGILVGGSCSGVSDPVAAIKMHYSNSDKYGGQSGSIAREDESWGGKGD 1645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02773 1645 CDD SANT 994 1032 IPR001005 -
Vimu3g02773 1645 MobiDBLite consensus disorder prediction 1262 1297 - -
Vimu3g02773 1645 MobiDBLite consensus disorder prediction 1328 1349 - -
Vimu3g02773 1645 MobiDBLite consensus disorder prediction 1221 1238 - -
Vimu3g02773 1645 MobiDBLite consensus disorder prediction 78 112 - -
Vimu3g02773 1645 MobiDBLite consensus disorder prediction 1382 1402 - -
Vimu3g02773 1645 Gene3D - 968 1045 - -
Vimu3g02773 1645 ProSiteProfiles SANT domain profile. 992 1032 IPR017884 -
Vimu3g02773 1645 MobiDBLite consensus disorder prediction 17 45 - -
Vimu3g02773 1645 Pfam Myb-like DNA-binding domain 778 819 IPR001005 -
Vimu3g02773 1645 Pfam Myb-like DNA-binding domain 993 1032 IPR001005 -
Vimu3g02773 1645 MobiDBLite consensus disorder prediction 117 133 - -
Vimu3g02773 1645 MobiDBLite consensus disorder prediction 1079 1099 - -
Vimu3g02773 1645 ProSiteProfiles SANT domain profile. 774 825 IPR017884 -
Vimu3g02773 1645 MobiDBLite consensus disorder prediction 17 266 - -
Vimu3g02773 1645 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 1642 - -
Vimu3g02773 1645 MobiDBLite consensus disorder prediction 1205 1238 - -
Vimu3g02773 1645 SUPERFAMILY Homeodomain-like 762 822 IPR009057 -
Vimu3g02773 1645 MobiDBLite consensus disorder prediction 976 991 - -
Vimu3g02773 1645 MobiDBLite consensus disorder prediction 1328 1347 - -
Vimu3g02773 1645 MobiDBLite consensus disorder prediction 974 993 - -
Vimu3g02773 1645 SMART sant 775 823 IPR001005 -
Vimu3g02773 1645 SMART sant 990 1038 IPR001005 -
Vimu3g02773 1645 Coils Coil 421 448 - -
Vimu3g02773 1645 MobiDBLite consensus disorder prediction 234 258 - -
Vimu3g02773 1645 MobiDBLite consensus disorder prediction 198 220 - -
Vimu3g02773 1645 MobiDBLite consensus disorder prediction 156 170 - -
Vimu3g02773 1645 SUPERFAMILY Homeodomain-like 991 1040 IPR009057 -
Vimu3g02773 1645 MobiDBLite consensus disorder prediction 1625 1645 - -
Vimu3g02773 1645 Gene3D - 755 827 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02773 Vimu-Chr3 42112755 42119804 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu3g02773 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02773 - - gmx:100810588 2672.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02773 3 42112755 42119804 Vimu3g02773 3 42112755 42119804 ECH