LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu3g02772	ATGACGGGTCATTCTTCAAGATTCTATCTTGTTTTGCTTTTGTCAATTTGTGGAGTGGTTTCTTTGGCTTCCCCCATTGAAGATCAGAAGAGAGATAGAATTACCCAGCTGCCAGGACAGCCAAAGAATGTGGGGTTTGCTCAGTATTCTGGCTATGTGACTGTGAATGAGCAAAGTGGGAGAGCACTGTTTTACTGGTTGGTGGAGGCACCAGTGAGTCGTGGGCCAAAGTCAAGGCCACTAGTTTTGTGGCTCAATGGTGGCCCCGGTTGTTCCTCTATTGCTTATGGTGCATCTGAAGAAATTGGTCCTTTTCACATTAGGCCTGATGGAAGGTCGCTTTACTCTAACCCTTATGCTTGGAACAAGTTGGCAAATATACTGTTCCTCGATTCCCCTGCTGGTGTTGGTTTTTCATATTCGAATAAAACAACAGATCTGTATACATTTGGTGACCAGAAAACAGCTGAAGATGCATATACTTTTCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGAATTCTACATTGCTGGAGAGAGTTATGCAGGTCACTACGTTCCTCAGTTGGGTCAAATTGTTTACCAAAAAAATAAGGGAATCCAGAATCCAGTCATAAATTTTAAGGGATTTATGGTTGGTAATGCCGTTACTGATGATTATCATGATTATGTTGGCACATTTGAATATTGGTGGACCCATGGTTTGGTTTCGGATTCCACGTATAGGATGCTAAAAGTTGCCTGCAATTTTGGGTCCTCTCAGCATCCATCAGTGCAATGCATGCAGGCTCTGAGAGTTGCAAATATGGAGCAGGGAAACATTGATCCATACAGCGTTTATACTCAGCCTTGTAACAACACAGCATCACTCAGACGCGGCTTGAAGGGTCGCTATCCATGGATGTCTCGAGCATACGATCCCTGTACTGAAAGGTATTCTGATTTGTATTTCAACCGTCCAGAAGTTCAGAAGGCATTTCATGCCAATGTAACTGGGATTCCTTATGCATGGAAAGCATGCGGTGATATTGTTGGGAACTATTGGACTGATTCTCCATTATCTATGCTTCCTATATATCAAGAACTTATTAGTGCTGGTGTCCGAATATGGGTTTACAGTGGAGACACTGATGCTGTGGTTCCAGTGACTGCTACTCGATATTCAATTGACGCCTTGAAGCTACCTACCATCATCAATTGGTACCCTTGGTATGACAGTGGCAAGGTTGGTGGTTGGAGTCAAGTTTACAAAGGGTTGACAATGGTTACAGTAAGAGGTGCTGGACACGAGGTTCCTCTTCATAGGCCCCGACAAGCATTCATTCTTTTTAGTTCATTCTTGCAGAACAAGTCGATGCCAACAACAAGTTAG	1383	0.4295	MTGHSSRFYLVLLLSICGVVSLASPIEDQKRDRITQLPGQPKNVGFAQYSGYVTVNEQSGRALFYWLVEAPVSRGPKSRPLVLWLNGGPGCSSIAYGASEEIGPFHIRPDGRSLYSNPYAWNKLANILFLDSPAGVGFSYSNKTTDLYTFGDQKTAEDAYTFLVNWFERFPQYKHREFYIAGESYAGHYVPQLGQIVYQKNKGIQNPVINFKGFMVGNAVTDDYHDYVGTFEYWWTHGLVSDSTYRMLKVACNFGSSQHPSVQCMQALRVANMEQGNIDPYSVYTQPCNNTASLRRGLKGRYPWMSRAYDPCTERYSDLYFNRPEVQKAFHANVTGIPYAWKACGDIVGNYWTDSPLSMLPIYQELISAGVRIWVYSGDTDAVVPVTATRYSIDALKLPTIINWYPWYDSGKVGGWSQVYKGLTMVTVRGAGHEVPLHRPRQAFILFSSFLQNKSMPTTS	460

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu3g02772	460	FunFam	Carboxypeptidase	28	290	-	-
	Vimu3g02772	460	ProSitePatterns	Serine carboxypeptidases, histidine active site.	423	440	IPR033124	GO:0004185
	Vimu3g02772	460	Gene3D	alpha/beta hydrolase	28	290	IPR029058	-
	Vimu3g02772	460	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	34	440	IPR001563	GO:0004185\|GO:0006508
	Vimu3g02772	460	ProSitePatterns	Serine carboxypeptidases, serine active site.	180	187	IPR018202	GO:0004185
	Vimu3g02772	460	FunFam	Carboxypeptidase	359	453	-	-
	Vimu3g02772	460	PRINTS	Carboxypeptidase C serine protease (S10) family signature	130	140	IPR001563	GO:0004185\|GO:0006508
	Vimu3g02772	460	PRINTS	Carboxypeptidase C serine protease (S10) family signature	166	191	IPR001563	GO:0004185\|GO:0006508
	Vimu3g02772	460	PRINTS	Carboxypeptidase C serine protease (S10) family signature	117	129	IPR001563	GO:0004185\|GO:0006508
	Vimu3g02772	460	PRINTS	Carboxypeptidase C serine protease (S10) family signature	423	436	IPR001563	GO:0004185\|GO:0006508
	Vimu3g02772	460	Gene3D	-	359	453	-	-
	Vimu3g02772	460	Gene3D	-	312	348	-	-
	Vimu3g02772	460	Pfam	Serine carboxypeptidase	38	453	IPR001563	GO:0004185\|GO:0006508
	Vimu3g02772	460	SUPERFAMILY	alpha/beta-Hydrolases	29	457	IPR029058	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu3g02772	Vimu-Chr3	42089742	42093566	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu3g02772	341	456	Calmodulin-binding Proteins	AT2G22960	29.060	2.37e-12	63.9

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu3g02772	3	42089742	42093566	Vimu3g02772	3	42089742	42093566	ECH