Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02756 ATGCATGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCAGTGACTGGCACTGGCATCAACCCTGCAAGGAGTCTCGGAGCTGCTGTTATCTACAACAAAGACAAGCCCTGGGATGACCATGTAAGTAATATTATTGCTTTTGTCACCACTTTATGTATATCTTGTACCAAAAGTCAGTTTATGAACTTAGAAATAATTTATAAAGCTAAGCTTTTATCTGATATATTGTTCCCTTGTGTCTGGTCAGTGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCTTTCTACCACCAGTTCATCTTGAGAGCAGGTGCTGCTAA 357 0.4258 MHVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHVSNIIAFVTTLCISCTKSQFMNLEIIYKAKLLSDILFPCVWSVDLLGRTIYWGSHCSFLPPVHLESRCC 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02756 118 Gene3D Glycerol uptake facilitator protein. 1 75 IPR023271 -
Vimu3g02756 118 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 62 IPR034294 -
Vimu3g02756 118 SUPERFAMILY Aquaporin-like 3 50 IPR023271 -
Vimu3g02756 118 Pfam Major intrinsic protein 4 50 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02756 Vimu-Chr3 41924325 41924969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02756 3 64 Major Intrinsic Protein MIP AT2G45960 69.355 4.04e-26 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02756 K09872 - thj:104806506 100.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02523 6 21985268 21987170 Vimu3g02756 3 41924325 41924969 ECH
Vimu3g02756 3 41924325 41924969 Vimu3g02756 3 41924325 41924969 ECH