Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02751 ATGGAAAACATGGAGAGGGGCTCAGAAAGGTGCTTAGATTCTCAACTTTGGCATGCCTGTGCTGGTGCCATGGTTCAAATGCCACCTCTTAACACAAAAGTCTTCTACTTTCCCCAGGGCCACGGGGAACACGCTAATGTGAAAGTAGATTTTGGCCAAACCAGGGTTCCACCACTCGTCCCTTGCAGACTCTCTGCCATGAAATACATGGCAGACCCTGACACAGATGAGGTGTATGTCAAAATGAGGCTGATCCCTTTGAGGGAACATGAATTGGATTTGGAGGATGATTGTTTCTTGGGGAACACTGTGGAGGGTCAAGAGAAACCTCCTACCTCTTTTGCCAAGACACTCACACAATCTGATGCCAACAATGGTGGAGGATTTTCTGTGCCTCGTTACTGTGCAGAAACCATCTTCCCGAGGTTGGACTATTCAGCTGAGCCTCCAGTTCAGACAATCATCGCCAAGGATATGCATGGACAGTGCTGGAAGTTTAGGCATATCTATAGAGGCACGCCTAGGAGGCATCTTTTGACCACTGGATGGAGCAATTTTGTGAATCAGAAGAGGCTTGTTGCTGGGGACTCCATTGTGTTTCTCAGGGCAGAAAACGGGGATCTTTGTGTTGGGATAAGGAGGGCTAAGAAGGGGATTGGTGGAGGGTCTGAGTTCTCTTCCGGATGGAACCCTCTCTTTGGTGGGGGTTCTGGATTCTTGTGTGGGAGTGAGAGCAACTTGGTGGGTGGTGCAAAAGGCGGTGGTGACGAGATGGTAGGAAGAGTGGCTGCTGAATCTGTTGTTGAGGCCGTAGCTTTTGCTGTTAATGGTAGGCCCTTCGAGGTTGTGTACTATCCAAGAGCTAGTTCCCCTGAGTTTTGTGTTAAGGCTTCTGTTGTGAAGGCTGCAATGCAAATTCAGTGGTGTTCTGGGATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCTTCTAGGATTAGCTGGTTCATGGGCACCATTTCTTCTGTTCAGGTTGCAGATCCCATTCGTTGGCCTGATTCTCCTTGGCGTCTTCTGCAGTGTGATACTGATTTGACCAACAGTGACACTGCTTCGTCAATGGTTAAACTATTCATTGGATTTCCACAAGTACAAATGGGTGCTTCAATTAGGCACTGTCTCCATAGAGTGCTTTTGATGATTGAACTTTACTTTTGGAAGTTCGAGTTACCTTTACCTTTTAACAATACTATGGCAGGATGTTTGTCTTCAGTGGTATGGGATGAACCAGATTTACTTCAGAATGTGAAGTGTGTAAACCCTTGGCTGGTTGAACTAGTCTCTAACATGCCCACCTTCAATCTCTCTGCATACTCACCTCCTAGAAAGAAACAACGCTTCTTACATGACCCATATTTTCAAGTCATCAACCAACTCCCAATGCCATCATTCTCTAGCAATCTTCTGAATTATACCAACTCTCTTTGTAACATTGAAAATAGTAGTTCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGACTATCTCCATCTGATTTTCCCTTCAACAAGCTCCCAACAGACATGCTTCTAGGTGGGTTCTCTAGGCTCGACCATGCAACAAAACCTGTTAGGCCTCCTTGCGGTACCTATAAGAACAGCACTTCTAATACTAGTACTAAGACCAATGTTGACATATCTTGCCTGTTGACTGTGGGAAATCCCATCCCGAATTTTAAGGAATCGAATGCAACAAAAGCACCCCACATCTTGTTATTTGGAAAACTTATTCACACTGAGCAAAAGAGTTCAAACACCAGCTCTGCAAGTACAACTGGGAATAGTGTGTCTGAGGGGAATTCACTCAAGACATCTAATGCTTCTGATGGCCTAGGTTCTGCTTTGCACCAAAATAGCCCAATTGAGAATAATTCTGATGGAGGGTCTCCCTGGTACAAGGATCAGCACAAGGCTGATCTGGGATCCGACAACGTTAACACGTTATGCATTGCTTTGTAA 2001 0.4558 MENMERGSERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHGEHANVKVDFGQTRVPPLVPCRLSAMKYMADPDTDEVYVKMRLIPLREHELDLEDDCFLGNTVEGQEKPPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGSEFSSGWNPLFGGGSGFLCGSESNLVGGAKGGGDEMVGRVAAESVVEAVAFAVNGRPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQCDTDLTNSDTASSMVKLFIGFPQVQMGASIRHCLHRVLLMIELYFWKFELPLPFNNTMAGCLSSVVWDEPDLLQNVKCVNPWLVELVSNMPTFNLSAYSPPRKKQRFLHDPYFQVINQLPMPSFSSNLLNYTNSLCNIENSSSAGIQGARHAQFGLSPSDFPFNKLPTDMLLGGFSRLDHATKPVRPPCGTYKNSTSNTSTKTNVDISCLLTVGNPIPNFKESNATKAPHILLFGKLIHTEQKSSNTSSASTTGNSVSEGNSLKTSNASDGLGSALHQNSPIENNSDGGSPWYKDQHKADLGSDNVNTLCIAL 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02751 666 SUPERFAMILY DNA-binding pseudobarrel domain 103 215 IPR015300 -
Vimu3g02751 666 CDD B3_DNA 113 214 IPR003340 GO:0003677
Vimu3g02751 666 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 621 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu3g02751 666 MobiDBLite consensus disorder prediction 597 651 - -
Vimu3g02751 666 Pfam Auxin response factor 271 353 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu3g02751 666 FunFam Auxin response factor 112 216 - -
Vimu3g02751 666 Pfam B3 DNA binding domain 114 215 IPR003340 GO:0003677
Vimu3g02751 666 MobiDBLite consensus disorder prediction 597 644 - -
Vimu3g02751 666 Gene3D - 308 369 - -
Vimu3g02751 666 Gene3D - 112 216 IPR015300 -
Vimu3g02751 666 ProSiteProfiles B3 DNA-binding domain profile. 114 216 IPR003340 GO:0003677
Vimu3g02751 666 SMART B3_2 114 216 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02751 Vimu-Chr3 41857936 41860497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02751 415 652 B3 DNA Binding Superfamily AT4G30080 38.367 3.56e-27 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu3g02751 B3 3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02751 - - tpra:123919517 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02751 3 41857936 41860497 Vimu3g02751 3 41857936 41860497 ECH