Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu3g02750 | ATGGTTGGACCTAACTTCATGGATGAGATAGACTGCGGTAGCTTCTTTGACCACATCGACGACCTTCTCGATTTTCCTGTGGAGGAAGTTGAGGGTGGCGCCCCAACCTTGCCCTCCGTCGCCGCCGCCGCCGCCGCCGGAAACTGCAACTCGCTGGCAAGCATCTGGCCCGCCGGGGCCGATTCCTTTCCCGGTTCTGACTCTGTGTTCTCCGGCAACAGCGCGTCGGACCTCTCCGCCGAGCTCTCAGTTCCGTATGAAGACATTTTGCAATTGGAATGGCTGTCGAACTTTGTGGAGGATTCGTTTTGTGGGGGGAGCTTGACCATGAAGAAAGTGGAAGAGCCATCGTGCATCACAAAGGAGGACTCAGTGCACAACCAATTCCACACATCAAGCCCAGTTTCTGTCCTTGAGAGCAGCAGTTCCTGCTCCGGAGGAAAGACGGTGCCGGCGCCGCCACGAAGCCCAGAGGTTTACATCCCCGTGCCATGTGGACGCGCACGCAGCAAGCGTCCACGTCCTGCCACCTTCAATCCTCGGCCAGCAATGAACCTCATTTCCCCTGCCTCGTCCTTTGTTGGGGAGAACATACAACCAAATGTAATTTCGTCGAAGACCTCTTCAGACTCTGAGAATTTTGCCGAGTCTCAACTTGTAGCAAAGATGCCAAAGCAAGGGTGTGGAGAGGCTAAGAAAAAGAAGAAAGTGAAGGTGACAGTTCCTGCAGCTGGCGGTGATAGCAACCAGAATGGATTGCAAGCGGTGAGGAAATGCATGCATTGTGAAATAACGAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTATGCAATGCATGTGGTGTTCGTTTCAAGTCTGGTAGGCTCTACCCGGAGTATCGCCCAGCTGCAAGCCCGACCTTTTGTCCATCTTTGCACTCGAATTCCCACAAGAAGGTGCTGGAAATGAGATGCAGGGGCATTGAGAAATCTGGTTTTGCAATGAATAATAATGCAGCTGCCTCACCCGAACTCATTCCAAACACTAACAGCAGCCTTAGCTTGGAGTACATTTGA | 1068 | 0.53 | MVGPNFMDEIDCGSFFDHIDDLLDFPVEEVEGGAPTLPSVAAAAAAGNCNSLASIWPAGADSFPGSDSVFSGNSASDLSAELSVPYEDILQLEWLSNFVEDSFCGGSLTMKKVEEPSCITKEDSVHNQFHTSSPVSVLESSSSCSGGKTVPAPPRSPEVYIPVPCGRARSKRPRPATFNPRPAMNLISPASSFVGENIQPNVISSKTSSDSENFAESQLVAKMPKQGCGEAKKKKKVKVTVPAAGGDSNQNGLQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRFKSGRLYPEYRPAASPTFCPSLHSNSHKKVLEMRCRGIEKSGFAMNNNAAASPELIPNTNSSLSLEYI | 355 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu3g02750 | 355 | FunFam | GATA transcription factor | 248 | 341 | - | - | |
Vimu3g02750 | 355 | MobiDBLite | consensus disorder prediction | 164 | 183 | - | - | |
Vimu3g02750 | 355 | Pfam | GATA zinc finger | 259 | 292 | IPR000679 | GO:0006355|GO:0043565 | |
Vimu3g02750 | 355 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 257 | 316 | - | - | |
Vimu3g02750 | 355 | Gene3D | - | 254 | 303 | IPR013088 | GO:0006355|GO:0008270 | |
Vimu3g02750 | 355 | ProSitePatterns | GATA-type zinc finger domain. | 259 | 284 | IPR000679 | GO:0006355|GO:0043565 | |
Vimu3g02750 | 355 | CDD | ZnF_GATA | 258 | 305 | IPR000679 | GO:0006355|GO:0043565 | |
Vimu3g02750 | 355 | SMART | GATA_3 | 253 | 303 | IPR000679 | GO:0006355|GO:0043565 | |
Vimu3g02750 | 355 | PIRSF | Txn_fac_GATA_plant | 3 | 346 | IPR016679 | GO:0003677|GO:0005634|GO:0045893 | |
Vimu3g02750 | 355 | PANTHER | GATA TRANSCRIPTION FACTOR | 15 | 328 | - | - | |
Vimu3g02750 | 355 | ProSiteProfiles | GATA-type zinc finger domain profile. | 253 | 289 | IPR000679 | GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu3g02750 | Vimu-Chr3 | 41838853 | 41840799 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu3g02750 | 19 | 321 | C2C2-Gata Transcription Factor Family | AT4G32890 | 36.013 | 2.09e-44 | 153 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-GATA | Vimu3g02750 | GATA | 1.2e-14 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu3g02750 | - | - | gmx:100815693 | 594.349 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu3g02750 | 3 | 41838853 | 41840799 | Vimu3g02750 | 3 | 41838853 | 41840799 | ECH | |
Vimu8g00080 | 8 | 3720653 | 3723521 | Vimu3g02750 | 3 | 41838853 | 41840799 | PCT |