Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02742 ATGGAATATTCCAACGGCAATGCTTCATTCAACCTTTGCAATGGAACCAGCGACCCACTTAACTGGGGTACGGCTGCAGAAGCCTTGAAAGGTAGCCACCTTGACCAGGTGAAGCGCATGGTCGAGGAGTACCGTAACCCCTTGGTCACGTTAGGTGGGAAGACCCTCACCGTGTCTCAGGTGGCGGCAGTTGCCACCTGTCATGCCCGTGGCGTCACGGTGGAGCTGGCGGGGGAGAGCCGGCGGAGAGTGAATGCCAGCAGTGACTGGGTCATTGATAGCATGAGCAGAGGCACTGATAGCTACGGGGTCACCACGGGCTTCGGTGCAACCTCACACAGGAGAACCAAGCAAGGAGGTGCCCTCCAAAACGAACTCATCAGATTTTTGAATGCCGGCATCTTTGGTAATAGTACAGAGGCTTCTCATACATTACCTTATTCATCTACAAGGGCAGCTATGTTGGTTAGGGTTAACACTTTGCTTCAAGGATATTCAGGCATTAGGTTCGAAATTATGGAGGCTATTACCAAGTTTTTAAATCACAACATAACTCCATGTCTTCCACTACGTGGTACAATCACTGCATCAGGTGACTTGGTTCCTTTATCCTATGTTGCTGGTCTTTTAATTGGAAGACCAAACTCCAAGTCAATTGGACCCAATGGAGAAGTACTCAATGCTAAAGATGCCTTTAAATTAGCTGGAATTGATGGAGGTTTCTTTGAGTTGCAACCTAAAGAGGGTTTGGCACTGGTCAATGGCACTGCAGTGGGATCTGGCTTGGCTTCCATTGTTCTTTTTGAGGCAAACTTACTTGTTGTTCTTTCTGAAGTTTTGTCTGCAATCTTTGCTGAAGTTATGCAAGGAAAACCAGAATTCACAGACCACTTGACTCATAAATTGAAGCATCACCCTGGTCAAATTGAGGCTGCTGCTATAATGGAACACATACTAGATGGAAGCTCATACATTAAGGAAGCCCAAAAGTTACATGAGATTGATCCACTTCAAAAGCCAAAACAAGATAGGTATGCTCTCAGAACATCTCCTCAATGGCTTGGACCACAAATTGAAGTAATCAGACATGCAACTAAGATGATTGAAAGAGAGATCAACTCTGTTAATGATAACCCCTTGATCGATGTTTCAAGGAACAAGGCACTTCATGGGGGAAATTTCCAAGGTACCCCAATTGGTGTTTCAATGGATAACACCCGTTTGGCCATTGCATCAATTGGGAAGCTTATGTTTGCCCAGTTCTCTGAACTTGTGAATGACTTGTACAATAATGGTTTACCTTCAAATCTAACAGCCGGTCGCAATCCAAGCTTAGATTATGGATTCAAAGGTGCTGAAATAGCAATGGCATCATACTGTTCAGAACTTCAGTATCTGGCCAACCCTGTCACTAATCATGTGCAGAGTGCTGAGCAACATAACCAAGATGTCAATTCCTTAGGCTTGGTTTCCTCAAGAAAGACTGCTGAAGCAGTAGAAATATTAAAGCTCATGTCTTCCACTTACTTGGTTGCACTGTGTCAAGCCATTGACTTGAGACATTTGGAAGAAAACATGAAGAACGCAGTTAAGAATGCTGTGAGTCAAGTGGCCAAAAGAGTTCTCACAACTGGCATCAATGGTGAGTTACACCCTTCTAGATTCTGTGAGAAGGACTTGCTTAAAATCGTTGATCATGAATATGTCTTTGCTTACATTGATGACCCCTGTAGTGTAACATACCCTTTGATGCAAAAGTTGAGATCAGTTCTGGTTGATCATGCAATGCAAAACGGTGAGAAAGAGGGAAATTTGAGTACCTCAATTTTCCATAAGATAAGAGCCTTTGAGGAAGAACTGATAGCCCTTTTGCCGAAGGAGGTAGAAAATGGTAGGATTGAAGCTGAGAATGGAAATTCAAGTATTCCTAACAGAATTAAAGAATGCAGATCTTACCCATTATACAAGTTTGTGAGAGAAAGCTTAGGTACAACTTTGCTAACAGGGGAGAAGGTGAAGTCACCTGGTGAGGAATGTGACAAGGTTTTTACTGCATTATGCGAAGGAAAGTTTATTGATCCAATGCTGGATTGTCTAAAGAACTGGAATGGTTCTCCTATACCAATATGCTAA 2133 0.4332 MEYSNGNASFNLCNGTSDPLNWGTAAEALKGSHLDQVKRMVEEYRNPLVTLGGKTLTVSQVAAVATCHARGVTVELAGESRRRVNASSDWVIDSMSRGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNSTEASHTLPYSSTRAAMLVRVNTLLQGYSGIRFEIMEAITKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGEVLNAKDAFKLAGIDGGFFELQPKEGLALVNGTAVGSGLASIVLFEANLLVVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKEAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDLYNNGLPSNLTAGRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLVSSRKTAEAVEILKLMSSTYLVALCQAIDLRHLEENMKNAVKNAVSQVAKRVLTTGINGELHPSRFCEKDLLKIVDHEYVFAYIDDPCSVTYPLMQKLRSVLVDHAMQNGEKEGNLSTSIFHKIRAFEEELIALLPKEVENGRIEAENGNSSIPNRIKECRSYPLYKFVRESLGTTLLTGEKVKSPGEECDKVFTALCEGKFIDPMLDCLKNWNGSPIPIC 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02742 710 PANTHER HISTIDINE AMMONIA-LYASE 15 710 IPR001106 -
Vimu3g02742 710 NCBIfam phenylalanine ammonia-lyase 18 700 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vimu3g02742 710 FunFam Phenylalanine ammonia-lyase 523 644 - -
Vimu3g02742 710 FunFam Phenylalanine ammonia-lyase 9 256 - -
Vimu3g02742 710 FunFam Phenylalanine ammonia-lyase 257 569 - -
Vimu3g02742 710 CDD PAL-HAL 54 520 IPR001106 -
Vimu3g02742 710 SUPERFAMILY L-aspartase-like 18 710 IPR008948 GO:0003824
Vimu3g02742 710 Gene3D - 10 256 IPR024083 -
Vimu3g02742 710 Gene3D - 523 644 IPR023144 -
Vimu3g02742 710 Gene3D Fumarase/aspartase (Central domain) 257 704 - -
Vimu3g02742 710 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 192 208 IPR022313 GO:0016841
Vimu3g02742 710 Pfam Aromatic amino acid lyase 56 536 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02742 Vimu-Chr3 41728388 41733127 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02742 11 710 Monolignol Biosynthesis Gene Families AT2G37040 80.714 0.0 1203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02742 K10775 - gmx:100801470 1275.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02514 6 21878693 21881798 Vimu3g02742 3 41728388 41733127 ECH
Vimu3g01225 3 21305930 21307603 Vimu3g02742 3 41728388 41733127 ECH
Vimu3g02742 3 41728388 41733127 Vimu3g02742 3 41728388 41733127 ECH