Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02740 ATGGGTAGTGTTGAAATCCCCAATTGGCTGAAAGAGTTGCCACTGGCCCCGGAATTTCGCCCTACGGACACCGAATTCGCTGACCCAATTGCTTACATTTCAAAGATTGAGAAGCAAGCTGCCAGCTTCGGGATTTGTAAGATTATCCCACCATTGCCCAAACCTTCAAAAAAATATGTTTTTTCTAATTTGAATAGGTCACTCTTGAAGTGCCCGGATTTTGGTCCAGATAACAGTTCATTAGGTGTTTGTAACTCATTGAAATTTGGTTCTGGGGATGGTAGTAGTGATGGGGTGTCTCGAGCTGTGTTTACTACTAGGCATCAAGAACTAGGGCAGAGTCAGAGTGTGAAAAAAGCTAAAGGAACGGTTCAGAATCCACAGTCAGGTGTTCATAAGCAAGTGTGGCAAAGTGGGGAGGTTTATACTCTGGAACAGTTTGAGTCTAAATCGAAGTCTTTTGCAAGAAACTTGCTAGGGTCAGTGAAGGATGTTTCTCCGCTGGTTATAGAGTCTATGTTTTGGAAGGCAACTTTAGAAAAGCCAATTTATGTGGAGTATGCCAATGACGTGCCTGGGTCTGCTTTTGAAGAGTCAAAGGGTCAATTTCATTATAGTCATAGAAGGCTAAGAAAAAGGACTTATTATAAGAGTAGGCTAGATAGCTCTGATTGTAAACAAACTGTAATGGGTTGCGGAAGAGATACCCAAATTGATGACACTAAGGGTGCTTCTGTCCAAAGTGACGCTGACAAATGTTTACGGATGACCAAATCAGTTGAAACTGTGTCAACATTTTCATCGAATGATGATTCACAATCTTTTAAAGAAAAGAGTTCAGATACCGGCAATGACATGCAAGGGACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACCTGCAAGTTATTGCACGATCGTCTGGCTCATTGACACGTTTTATGCCGGATGATATTCCTGGTGTGACTTCACCTATGGTATACATTGGTATGCTATTCAGTTGGTTTGCTTGGCACGTAGAGGATCATGAGCTTCACAGCATGAATTTTCTTCACACTGGCTCATCAAAGACATGGTATGCTGTTCCTGGAGATTATGCGTTTGCTTTTGAGGAAGTCATACGCACTGAGGGTTATGGTGGTAATATTGATCATTTAGCCGCTTTGAAACTTTTGGGTGAAAAAACAACTCTTTTGTCACCTGAGGTAATTGTTGCATCTGGAATTCCTTGTTGCAGGTTGACACAGAACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTGGGATTCAGCCATGGTAATTGCTTTGAAGTTTATGTACACCTGATTTTTGCAGTAAACTTGTGTCGGAGGCTTTTAGCTTATGACTAA 1380 0.4174 MGSVEIPNWLKELPLAPEFRPTDTEFADPIAYISKIEKQAASFGICKIIPPLPKPSKKYVFSNLNRSLLKCPDFGPDNSSLGVCNSLKFGSGDGSSDGVSRAVFTTRHQELGQSQSVKKAKGTVQNPQSGVHKQVWQSGEVYTLEQFESKSKSFARNLLGSVKDVSPLVIESMFWKATLEKPIYVEYANDVPGSAFEESKGQFHYSHRRLRKRTYYKSRLDSSDCKQTVMGCGRDTQIDDTKGASVQSDADKCLRMTKSVETVSTFSSNDDSQSFKEKSSDTGNDMQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYAVPGDYAFAFEEVIRTEGYGGNIDHLAALKLLGEKTTLLSPEVIVASGIPCCRLTQNPGEFVVTFPRAYHVGFSHGNCFEVYVHLIFAVNLCRRLLAYD 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02740 459 Gene3D Cupin 2 446 - -
Vimu3g02740 459 SMART JmjN_1 15 55 IPR003349 -
Vimu3g02740 459 MobiDBLite consensus disorder prediction 265 287 - -
Vimu3g02740 459 ProSiteProfiles JmjC domain profile. 293 459 IPR003347 -
Vimu3g02740 459 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 436 - -
Vimu3g02740 459 SMART cupin_9 293 459 IPR003347 -
Vimu3g02740 459 SUPERFAMILY Clavaminate synthase-like 293 441 - -
Vimu3g02740 459 Pfam JmjC domain, hydroxylase 326 444 IPR003347 -
Vimu3g02740 459 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Vimu3g02740 459 Pfam jmjN domain 17 50 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02740 Vimu-Chr3 41715590 41718443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02740 1 441 C2H2 Transcription Factor Family AT5G04240 63.288 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vimu3g02740 JmjC 1.1e-34 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02740 - - gmx:100799861 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02740 3 41715590 41718443 Vimu3g02740 3 41715590 41718443 ECH