Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02739 ATGGCATCTATAGTTAAAAAGAAACCTCTTATCTGCCCACAGGACCGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTTAGTGTAGCCAAGGAGGCTGCAGTGCGCAGAGCTGCAATGAACTATCTTCCCATGCTTTCCCATCAGCAACTGCTTTACTTACTGACCATGTCTTTTATTTCAAGTTCTCGATTGAGAGACCGTCAGAAAGAAGAGAGGGAGTTTTTAGTAAAACAGGCTTTCATAGAAGACATGCTACAGGAAAACAAGCTGCTATCCATTCTTCTTGGAAAGGAAGCTGCTAAAAGAGCTGTTTTATGGAATGCTGAGTTGCTGCCAGATTCCAGCAAAGGTTTTCAGTTGCCCGATTTAACTTCTACAACTGGAACCTCTGTGGCAAACATGCCAAATATTAGTTCTGCCAAAAAAAGTGGTCATTATCTGCTTGATGATGAGATGAGTTTGTATATGGATTCTTTGAATAATATAGATATTGGTGGTGATGATCTTCCCTATCACTTCGAAACTGATTCCGGAGCATTGGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCATTTATGGCTGTGATACAACCAACTGAGAAATTGACAATGGAACTTCCTGATAATCATCTAATTCAAGTTTCGTCGTCGGACTCTACTGCTGGGGATCTATCTTTTTCTGAACTCTCATCAGTAAAGGAGATGCCAGATCAATCATTAAATAAGTGCAGTAAGTGTTGGAACACCTCCAGTAAATATTTTAGGCCTCGGATTTTCTGCCTGGGGCATGCTGTTCAAATAGTAGATATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGACTATCAGAAAATAAAGGCACATGCCAGCGAAGTTGCGGTAGAGATACATAGTGCTTTTGATTATAATGAGGTTCCATTAGATACGGCATCCGCAGAAAATTTAACCTTGATAGATCTGGCTGTTGATGGTGAAGAGCTTGATGAATGTGAAGACTGGACATCAACACTTGGCATTAACCTACGGAATTGGGTCCATGCAAGAAATAATGCTCCTTCTAAACAAGTTCCTTGGACACTTGGGACATTGTTCCATGATAAATGTCCTGCTTCAAATATTTTAGCTTTAAATTGGCAGTCTCGGAGATTCCGGTCAAAAAGGTCGAGCCATTTAGCTCAGACTAATTCCTCTCACAGCATTGAGAGAAAGAAGGATGATCAGTTGGGTGGAAGAATAAATGACTCCACTGCTGACAAGAAGCTAATTCAATATTCAAGAAGGAAGTTCAAGTCAAAGCACACGTGTTTCCCTGTAGCAAACATGGTCTGTGAACTCCAAGAGAAGTCCCAAAAGGTGTCTGCTACTTTAAGTGCGGATCATAATAATTGTGTTTCTAAAACTCGTCAAGCTGAGGATTTAAGGACAGAGTGTGCATTGCCATGTTCTTCTGTTTGTACTGAAATGTCTTCAATGCATCCTGAAATCCAGATTGCTGAAATGCCCATTAGCACGAAAATGAGTGCTGCTAATTCACAACCTTCAAATTCCATTCCTGATCATGTTTTAATGATTGAAAAACTTGGAGCAAAGATTGAGAATCAAACGAAGCAGGAATCATATGTAGACAGAAATAATGATTTAACGCTCAGTCATTCTAAGATGCACCACAATACCAATGTATCAGAAATATGTGGCAAGGAGAGCCAGGATTTTCAGTACAAGAAATGTTCTAGCACACTGTCAAATGCACCAGATGGAAATATTGAAATGATTAAAAAGACTGAAATTGCAGAAGCAGTTATCATTGATAGCCACTGTAATAGGTTAACATTGGATTATCAAGGGCATCAAGAATATCAGTCTAACTACAAAAGCAACAATGAGGAAGCTGCTGTATCAACTGCTTCAATGGTAAATCAATCTACACTTGCTTCTGTGGATGGAAACGTTGAAAGTCCAAATCATAATCATATCTCAGAAAGAATTAGTAGTCCTATTTTCCTAGAAAAGGCAAATGAGGAAGGAATTGATTCTATAAGCAAAATGGACAAGGAACCTCGAATTAATGAAAGCCCAATTAGCGAACATACTCCAAACGAAGTTTGTGAAGTTCGAAGAGAGCTTTATGCTTCTGTAGACTTGCAAAGTAACGGAATCTTGGATGATGAGCAACAAGTAACTCAGGGTGGAAAAAATAGCAAAAGGGAAATAACTCATGTTTCAACTGAACAATGTTGTCCTTCGTCTGGGAAGTGTCAGATTGAAAGTGTAAAAAAAATTAATGAGGGCCCTGTTTGCAGTTATGCTGCAAAAGGTGAAAATAAAAGCGTAACTTCAATAGAGTTAGGATGTTCTGAAGTTTCAGTGGAAGCCTGTCCTAACAAAGACTCCTGTATGCAATTTATTCCAGATAAAGAAAAAGAAATGACAGACCAGTCAGTTAATAGAATTGATGAGGAACTTTTCTCTGGATCGGATACCTCGATGAAAGAGTCTTTCCTATCAGTGCAGGAATGCTCAAAAATTGAGAACGAGATTTATGTTACAGAAAACATTAATGAAATCAAAGCTGATTTGTCACAATATAAAAGGGGGCTGGAGAGTTGTGAGTTAGCTACAGAAGTTCCCAGATTAAATTCTGGGAATAAAAAAAAGAGGAAAGTGGAACGAACAGGGAACCGATCTAGTTCTGACAACTTTATTAGAAGTCCATGTGAGGGGCTGAGGCCAAGAGCTGGGAAGTTTGCCGCTGGAAAAAGTGGAGTGGAAATCAACCAAGTTGACAAGGAAAATCAGGTGGCTAAACGGGCAAGGAGATCTTCTGAAGTTTTGGTTCTTCGCAAAAATAAAAAAGATGGTGTTAAAAAGTCCCACAAGTGCGACCTCGATGGTTGCCGAATGAGTTTCAAGACTAAGGCAGAGTTACTGTTGCATAAACGAAACCTTTGCCCACATGAAGGGTGTGGTAAGAAGTTCAGTTCCCACAAATATGCTCTACTTCACCAGAGAGTTCATGATGATGAGAGGCCCCTTAAGTGCCCATGGAAAGGTTGTTCCATGTCGTTCAAGTGGGCTTGGGCAAGGACAGAGCACATACGCGTACATACTGGGGAGAAGCCTTATCACTGCAAGGTGGAGGGATGCGGCCTTTCATTCAGGTTTGTATCTGATTTTAGCAGACACAGACGGAAAACGGGACACCATGTGAAACCTCCTGCTTGA 3252 0.4038 MASIVKKKPLICPQDRFNCGEAANFGTPQWLSVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISSSRLRDRQKEEREFLVKQAFIEDMLQENKLLSILLGKEAAKRAVLWNAELLPDSSKGFQLPDLTSTTGTSVANMPNISSAKKSGHYLLDDEMSLYMDSLNNIDIGGDDLPYHFETDSGALACVGCGILGFPFMAVIQPTEKLTMELPDNHLIQVSSSDSTAGDLSFSELSSVKEMPDQSLNKCSKCWNTSSKYFRPRIFCLGHAVQIVDMLQSKGGANVLIICHSDYQKIKAHASEVAVEIHSAFDYNEVPLDTASAENLTLIDLAVDGEELDECEDWTSTLGINLRNWVHARNNAPSKQVPWTLGTLFHDKCPASNILALNWQSRRFRSKRSSHLAQTNSSHSIERKKDDQLGGRINDSTADKKLIQYSRRKFKSKHTCFPVANMVCELQEKSQKVSATLSADHNNCVSKTRQAEDLRTECALPCSSVCTEMSSMHPEIQIAEMPISTKMSAANSQPSNSIPDHVLMIEKLGAKIENQTKQESYVDRNNDLTLSHSKMHHNTNVSEICGKESQDFQYKKCSSTLSNAPDGNIEMIKKTEIAEAVIIDSHCNRLTLDYQGHQEYQSNYKSNNEEAAVSTASMVNQSTLASVDGNVESPNHNHISERISSPIFLEKANEEGIDSISKMDKEPRINESPISEHTPNEVCEVRRELYASVDLQSNGILDDEQQVTQGGKNSKREITHVSTEQCCPSSGKCQIESVKKINEGPVCSYAAKGENKSVTSIELGCSEVSVEACPNKDSCMQFIPDKEKEMTDQSVNRIDEELFSGSDTSMKESFLSVQECSKIENEIYVTENINEIKADLSQYKRGLESCELATEVPRLNSGNKKKRKVERTGNRSSSDNFIRSPCEGLRPRAGKFAAGKSGVEINQVDKENQVAKRARRSSEVLVLRKNKKDGVKKSHKCDLDGCRMSFKTKAELLLHKRNLCPHEGCGKKFSSHKYALLHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGEKPYHCKVEGCGLSFRFVSDFSRHRRKTGHHVKPPA 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02739 1083 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1017 - -
Vimu3g02739 1083 ProSiteProfiles Zinc finger C2H2 type domain profile. 1051 1082 IPR013087 -
Vimu3g02739 1083 MobiDBLite consensus disorder prediction 407 423 - -
Vimu3g02739 1083 FunFam Probable lysine-specific demethylase ELF6 1018 1047 - -
Vimu3g02739 1083 ProSiteProfiles Zinc finger C2H2 type domain profile. 991 1020 IPR013087 -
Vimu3g02739 1083 SUPERFAMILY beta-beta-alpha zinc fingers 992 1028 IPR036236 -
Vimu3g02739 1083 ProSitePatterns Zinc finger C2H2 type domain signature. 993 1015 IPR013087 -
Vimu3g02739 1083 SMART c2h2final6 1051 1077 IPR013087 -
Vimu3g02739 1083 SMART c2h2final6 1021 1045 IPR013087 -
Vimu3g02739 1083 SMART c2h2final6 991 1015 IPR013087 -
Vimu3g02739 1083 SMART c2h2final6 968 990 IPR013087 -
Vimu3g02739 1083 MobiDBLite consensus disorder prediction 397 423 - -
Vimu3g02739 1083 SUPERFAMILY beta-beta-alpha zinc fingers 1031 1081 IPR036236 -
Vimu3g02739 1083 ProSiteProfiles Zinc finger C2H2 type domain profile. 1021 1050 IPR013087 -
Vimu3g02739 1083 ProSitePatterns Zinc finger C2H2 type domain signature. 1023 1045 IPR013087 -
Vimu3g02739 1083 ProSitePatterns Zinc finger C2H2 type domain signature. 1053 1077 IPR013087 -
Vimu3g02739 1083 Gene3D Classic Zinc Finger 989 1078 - -
Vimu3g02739 1083 MobiDBLite consensus disorder prediction 890 913 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02739 Vimu-Chr3 41708810 41714758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02739 17 455 C2H2 Transcription Factor Family AT5G04240 45.824 4.53e-107 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g02739 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02739 - - gmx:100799861 1603.19