Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02735 ATGTGTAGGTGGAGCACCAATTCAAAGCATTTGTGGGTGCCCATTGTGCTTTTCAGCTTGTTCCTCTGGATGACGCAGTTGCAGTGCCAACAAATGAATGACTATGACCAAATTGATAGCCCTGCTGTTCTTCCCCTCGTCACTCAGCTTGTGTACAGTCAAATCTCCAATTTGACATCAATCATCAGCCAGGAAATTAGCAGGGAGTCCACTTTCTGTGTCAAAGATCCGGATGCTGATTGGAATCAAGCATTTAATTTTTCAACCGATTTGGACTTTTTGGCATCTTGCATTAAGAAGACTAGAGGAGATATTGCAAAACGTTTGTGTACAGCGGCAGAAGTGAAGTTTTTCTTGGATAGTTTATTGGGGAAATCTGTAAGTGCCAATTATTTAAAGCCTAACAAGAACTGCAATTTAACCTCGTGGGTCTCTGGTTGTGAGCCAGGATGGGCCTGTAGTGATCTCTCAAGCCAGAAGGTTGATCTTAAAAATTCCAAGGAGATACCTGCAAGAACTTCAAACTGTCAACCATGTTGTGAAGGCTTCTTTTGTCCTCATGGTATCACATGCATGATACCATGCCCTCTAGGTTCATATTGCCCTCTTGCTAAACTCAATAAAACAACTGGCGTATGTGAACCATATCTTTATCAGCTGCCTCCAATGCAGCCAAATCATACCTGTGGTGGAGCAAATGTTTGGGCTGACGTTAGTAGCAGTAGTGACATATTTTGCTCAGCTGGATCGTATTGTCCAACAACCATAAAAAGAATTTCTTGCAGTAGTGGACATTACTGCAGGATGGGTTCCACATTCGAGAAAAGATGCTTCAAGTTGAGTTCATGTAATTCAAACACAGCAACCCAAAATATGCGTGCATATGGAATTATGCTCATTGCTGCTTTGAGTACTTTGCTACTCATTATTTACAATTGTTCTGACCAAGTTCTCACTACTAGGGAAAGAAGAGTGGCCAAATCTAGAGAAGCAGCAGCTAGAAGTGCAAGGAAGACTGCAAATGCGCGCCAAAGATGGCAATTTGCAAAAGATGCAACTAAGAAGGGTGCAATGGGGCTGCAAGCTCAACTATCTCGCACCTTCAAGAAGGATGCAGCAAATCTGGAAAAATTTAAAATTCTGAAACAAGCAAATTCTGAAGCAGACGTTGAATTATTGTCACATCCACGACCTACAACTTCAAGCATGGTTGCAAGTTCATCGGTGGCAACAAATAAAAAGGGAAAAGAACCCAGTGGTCTGATGCAGATGATACACGAAATTGAAAATGATCCTGATATTGATGATATTGAAAATGATCCTGATACAGAAATAGAAACTAGTGGTAAAAGTGTCACAGCAAATGTGTCAAAGGGAAAACAACCACATACTCATAGCCAAATTTTTAAGTATGCATATTCTCAGCTTGAAAAAGAGAGAGCTCAGCAAAAAGAAAACAAGAAGCTTACCTTCTCCGGGGTAATTAAAATGGCTACAAACACTGAAAGAAGGAAAAGGCCTTTAATTGAAATTTCTTTCAAGGATCTGACTCTTACATTGAAAGCTCAAAACAAGCATATATTGAGATATGTTACCGGGAAAATTAAACCTGGCCGCATCACTGCTGTCATGGGTCCATCAGGGGCCGGCAAGACAACATTTCTTTCGGCTCTAGCTGGAAAGGCATTAGGATGCTCGGTCACTGGTTCAATTCTTATAAATGGAAGGAATGAATCAATCCATTCCTTTAAGAAAATTACTGGTTTTGTGCCACAAGATGATGTAGTTCATGGAAACCTAACAGTGGAAGAGAATCTCTGGTTCAGTGCACAGTGCAGGCTATCTGTTGACTTGTCAAAACCAGAAAAAGTTCTGGTTGTCGAAAGAGTTATTGAATTCTTGGGGCTTCAATCAGTGCGTAATTCCTTGGTTGGAACTGTGGAAAAGCGAGGGATCTCTGGAGGCCAAAGGAAGCGTGTAAACGTTGGATTGGAAATGGTTATGGAACCTTCACTATTGATCTTGGATGAACCCACATCTGGCTTAGACAGTGCATCTTCTCAACTACTTCTAAGAGCACTAAGACGCGAAGCTCTTGAGGGAGTGAACATTTGCATGGTGGTTCACCAACCCAGCTATGCTTTGTACAAGATGTTTGATGACCTGATACTTCTGGGAAAAGGTGGTCTTACTGTCTATCACGGATCTGCAAAGAAAGTTGAAGAATACTTTTTGGGCCTGGGGATCAAAATTCCAGAGCGGATTAATCCTCCAGATTACTTCATTGACATTTTGGAGGGCCTGACAACACCTGGTGGAAGCTCAGGACTGAGTTACAAGGACCTGCCAGTTAGATGGATGCTTCATAACGGATATCCAATACCTCTTGATATGAGGCAGAATGCGGTTCAATATGATATGTCACACAGTGTAAATTCAGCTAATGAAATTGATCCCCATGGATCCAGTCATGCAGACAAAACCTTTGCTGGAGAATTATGGCAAGACATGAGAAACAATGTGGAACTGAGGGGGGAGAAGATAAGACACAATTTTTTTAAATCCAAGGATTTATCTGACCGGAAAACTCCTGGCGTTTTCAAGCAATACAAGTATTTTCTTATACGGGTTGGGAAGCAGCGGTTACGAGAAGCTAGGATGCAAGCCATAGATTATCTTATTTTGTTACTTGCTGGAGCCTGCTTAGGATCACTTACAAAAGGCAGTGAGCAAACGTTTGGTGCAGCTGGTTACACCTATACGGTGATTGCTGTATCTCTTCTGTGCAAAATAGCGGCCTTGAGATCATTTTCCTTGGAAAAATTACACTACTGGAGGGAGAGTGATTCTGGCATGAGCAGCTTGGCTTATTTTCTCTCTAAAGACACCCTAGATCATTTTAACACAGTGATTAAGCCTGTGGTGTACCTTTCTATGTTCTATTTCTTCACCAATCCGAGATCAACTTTTGCAGATAATTATATTGTGCTGCTTTGTCTTGTGTACTGTGTTACTGGTATAGCATATGCACTGTCCATATTTTTTGAACCTGGTGCTGCTCAGTTATGGTCAGTACTTCTTCCCGTTGTTTTAACTCTCGTTGCAACACAACGAAAGGATAGTAAAATTTTGAAGGATATAGCTAATTTATGCTACTCTAAGTGGGCTTTACAAGCTTTAGTTGTTGCAAACGCTGAAAGGTATCAGGGGGTGTGGCTCATAACTCGTTGTGGTTCACTTTTGAAAAGTGGCTACAATCTTCATGATTGGAGTTTGTGCATATCCATCCTCATTCTTATGGGTGTAATTGGCCGGGCTATAGCATTTTTCTGCATGGTAACCTTCCGAAAGAAGTAA 3357 0.4138 MCRWSTNSKHLWVPIVLFSLFLWMTQLQCQQMNDYDQIDSPAVLPLVTQLVYSQISNLTSIISQEISRESTFCVKDPDADWNQAFNFSTDLDFLASCIKKTRGDIAKRLCTAAEVKFFLDSLLGKSVSANYLKPNKNCNLTSWVSGCEPGWACSDLSSQKVDLKNSKEIPARTSNCQPCCEGFFCPHGITCMIPCPLGSYCPLAKLNKTTGVCEPYLYQLPPMQPNHTCGGANVWADVSSSSDIFCSAGSYCPTTIKRISCSSGHYCRMGSTFEKRCFKLSSCNSNTATQNMRAYGIMLIAALSTLLLIIYNCSDQVLTTRERRVAKSREAAARSARKTANARQRWQFAKDATKKGAMGLQAQLSRTFKKDAANLEKFKILKQANSEADVELLSHPRPTTSSMVASSSVATNKKGKEPSGLMQMIHEIENDPDIDDIENDPDTEIETSGKSVTANVSKGKQPHTHSQIFKYAYSQLEKERAQQKENKKLTFSGVIKMATNTERRKRPLIEISFKDLTLTLKAQNKHILRYVTGKIKPGRITAVMGPSGAGKTTFLSALAGKALGCSVTGSILINGRNESIHSFKKITGFVPQDDVVHGNLTVEENLWFSAQCRLSVDLSKPEKVLVVERVIEFLGLQSVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALYKMFDDLILLGKGGLTVYHGSAKKVEEYFLGLGIKIPERINPPDYFIDILEGLTTPGGSSGLSYKDLPVRWMLHNGYPIPLDMRQNAVQYDMSHSVNSANEIDPHGSSHADKTFAGELWQDMRNNVELRGEKIRHNFFKSKDLSDRKTPGVFKQYKYFLIRVGKQRLREARMQAIDYLILLLAGACLGSLTKGSEQTFGAAGYTYTVIAVSLLCKIAALRSFSLEKLHYWRESDSGMSSLAYFLSKDTLDHFNTVIKPVVYLSMFYFFTNPRSTFADNYIVLLCLVYCVTGIAYALSIFFEPGAAQLWSVLLPVVLTLVATQRKDSKILKDIANLCYSKWALQALVVANAERYQGVWLITRCGSLLKSGYNLHDWSLCISILILMGVIGRAIAFFCMVTFRKK 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02735 1118 Pfam ABC-2 type transporter 709 1118 IPR043926 GO:0140359
Vimu3g02735 1118 FunFam ABC transporter G family member 24 505 747 - -
Vimu3g02735 1118 Pfam ABC transporter 530 680 IPR003439 GO:0005524
Vimu3g02735 1118 CDD ABCG_EPDR 509 735 - -
Vimu3g02735 1118 MobiDBLite consensus disorder prediction 397 417 - -
Vimu3g02735 1118 ProSitePatterns ABC transporters family signature. 652 666 IPR017871 GO:0005524|GO:0016887
Vimu3g02735 1118 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 475 1105 - -
Vimu3g02735 1118 Gene3D - 509 744 IPR027417 -
Vimu3g02735 1118 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 511 753 IPR003439 GO:0005524
Vimu3g02735 1118 SMART AAA_5 537 729 IPR003593 GO:0016887
Vimu3g02735 1118 MobiDBLite consensus disorder prediction 397 414 - -
Vimu3g02735 1118 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 511 741 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02735 Vimu-Chr3 41682132 41690363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02735 506 712 Calmodulin-binding Proteins AT2G36910 27.358 1.41e-12 70.5