Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02723 ATGGGTGGGAGCGAGAGCTCGAAAGGCATGGTTTTGGGTCGTTTGGTTGAGTTCATCAAGGAGATTTCTGGGTTGCCAGAGTGTCAGAACTTTTGCAAGAGGGTGTATGGGAATTTGGTTCGCAGGGTGAAGCTTCTGAGTCCGCTCTTTGAGGAATTGAAAGATAGTGACGAGTCCCTCAGCGATGAACTACTCGAGAGCTTTGAGTCTCTCTTGGTTGCTTTGGATTCAGCTAAGACCCTTTTAAAGTCTGTCAACCAAGGGAGCAAGCTATATCAGGCGATTGTAAAGAGGTCGAAGGAAAGATGTCTCTTCTATGTCGTTAAGCCATTTATAGAATTTCTTATGCCCCAAAAACACTTTGAAAGAGTTGTCAAGTTGATCCCTGTAACACACAGACGAGGTCTTGATAACACTGGGAAGAAGCCATCAACATCATCAGACGAGAAAGAGAGGCTTAACCATCATTTAAGTTTGAAACAAAAGAAAAAGAATGTCAGCAATATACCGATGCGGTGGTCACCCCTTGGAGTAGTTGATCGGTGGCTCCGGAACAAAGCAAAGAATGAGGCCAAGGTTTGTATGAGAGAAGGCAAAAAAGCTGAAAAAGGAAAAGAGAAGCTTCGAGGTGTGTCCAAAGAGCAAGAGATTATAGCATATGCAGATGCTGCATTGAGGAGGAATGATATAGCGGACAAATTCCAACAAGTAACTGAAAAAATTGAAGCTGTGTTGAGTGAAATTCCTTACTACAAACTTGAGATATCAGAGGAAGTTCGAGAACAGATTGAACTGGTACATGCTCAATTCAAAAGAGCTAAAGCTCAAACGGAATTTGCTGATATACAACTTGACATGGATATGGCAATGGCACAGAAAGAAAAAGACCCTGATCCTGCTATACTAAAAAGGCTTTCTGAGAAGTTGCATCTGAGGACAATAAATGACCTAAGGAAAGAGTCTAGTGAATTACATGAATTGTTGATCACAAATGGTGGAGAACTAGGAGAGTCTTTTGAAATGATCACATCCCTTCTTAGCAAGCTGAGGGACTGTGTGCTCACAGAAAATCCGGAAGTCGACACAAGTGAATGTGAAAAATTAACAATTAAGCACAGGTCTCCCGTGATCCCAGATGATTTTCGATGTCCTATATCTCTTGAACTAATGAAAGATCCTGTTATTGTCTCTACTGGTCAGGTACAATCTGACATTGTCTTTGTACATGGTACTGCTACATATGAAAGATCTTGCATTCAAAAATGGCTTGATGCTGGTCACAAAACCTGCCCCAAGACACAGCAGACACTTGTCCATACAGCCCTTACCCCTAACTATGTTCTAAAGAGTCTGATTGCTTTGTGGTGTGAAAGCAATGGTATTGAGCTACCAAAAAAACAAGGTAGTTGTAGAACAAAGAAATGTGGTGGAAGCAGTCATTCAGATTGTGATCGAACTGCTATCAGTGCCTTACTTGATAAACTGGCGAGTAACAACATAGAACAGCAAAGGGCAGCTGCTGGTGAGCTCCGCTTGCTGGCTAAGAGGAATGCAGATAATCGAGTGTGCATTGCTGAGGCCGGAGCAATACCGCCCCTTGTAGATTTGTTGTCTTCTTCAGACCCTCGAACCCAAGAGCATGCCGTTACAGCGCTTCTCAATCTTTCCATCAATGAGAGTAACAAAGGAACTATTGTAAATGCCGGAGCCATACCAGATATTGTAGATGTACTAAAAAAGGGAAGCATGGAGGCTAGAGAAAATGCAGCTGCAACTCTCTTTAGTTTATCAGTACTGGACGAGAACAAGGTGCAAATAGGTGCAGCTGGAGCAATCCCCGCCCTTATAAAGTTACTTTGTGAAGGTACTCCCAGAGGTAAGAAGGATGCTGCTACTGCAATTTTTAACCTATCTATTTATCAGGGAAACAAAGCAAGAGCTGTAAAAGCTGGTATAGTAGGCCCGCTGATACAATTTCTGAAGGATGCTGGGGGTGGAATGGTAGATGAAGCACTAGCTATATTGGCAATTCTTGCAAGCCACCATGAAGGCAGGGTGGCGATTGGTCAGGCCGGACCGATCCCTATTCTAGTTGAGGTTATACGAACCGGCTCTCCACGCAACAGAGAGAATGCTGCCGCCGTCTTGTGGTCATTATGCACCGGAGATCCCCTACTATTAAAACTAGCAAAAGAACATGGTGCCGAAGCAGCACTGCAGGAGTTATCAGAAAATGGAACTGATAGAGCGAAGAGAAAAGCTGGAAGCATACTAGAACTCTTGCAGCGAATAGAAGGGGATGATAATCTGCGGAATTCTTAG 2322 0.4345 MGGSESSKGMVLGRLVEFIKEISGLPECQNFCKRVYGNLVRRVKLLSPLFEELKDSDESLSDELLESFESLLVALDSAKTLLKSVNQGSKLYQAIVKRSKERCLFYVVKPFIEFLMPQKHFERVVKLIPVTHRRGLDNTGKKPSTSSDEKERLNHHLSLKQKKKNVSNIPMRWSPLGVVDRWLRNKAKNEAKVCMREGKKAEKGKEKLRGVSKEQEIIAYADAALRRNDIADKFQQVTEKIEAVLSEIPYYKLEISEEVREQIELVHAQFKRAKAQTEFADIQLDMDMAMAQKEKDPDPAILKRLSEKLHLRTINDLRKESSELHELLITNGGELGESFEMITSLLSKLRDCVLTENPEVDTSECEKLTIKHRSPVIPDDFRCPISLELMKDPVIVSTGQVQSDIVFVHGTATYERSCIQKWLDAGHKTCPKTQQTLVHTALTPNYVLKSLIALWCESNGIELPKKQGSCRTKKCGGSSHSDCDRTAISALLDKLASNNIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPPLVDLLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKKGSMEARENAAATLFSLSVLDENKVQIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLSIYQGNKARAVKAGIVGPLIQFLKDAGGGMVDEALAILAILASHHEGRVAIGQAGPIPILVEVIRTGSPRNRENAAAVLWSLCTGDPLLLKLAKEHGAEAALQELSENGTDRAKRKAGSILELLQRIEGDDNLRNS 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02723 773 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 375 462 IPR013083 -
Vimu3g02723 773 SMART Ubox_2 380 455 IPR003613 GO:0004842|GO:0016567
Vimu3g02723 773 SUPERFAMILY ARM repeat 485 761 IPR016024 -
Vimu3g02723 773 FunFam RING-type E3 ubiquitin transferase 467 566 - -
Vimu3g02723 773 FunFam RING-type E3 ubiquitin transferase 602 772 - -
Vimu3g02723 773 CDD RING-Ubox_PUB 378 442 IPR045210 -
Vimu3g02723 773 Gene3D - 10 108 IPR036537 GO:0007166
Vimu3g02723 773 Pfam Armadillo/beta-catenin-like repeat 517 556 IPR000225 GO:0005515
Vimu3g02723 773 Pfam Armadillo/beta-catenin-like repeat 600 638 IPR000225 GO:0005515
Vimu3g02723 773 SUPERFAMILY RING/U-box 376 464 - -
Vimu3g02723 773 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 528 570 IPR000225 GO:0005515
Vimu3g02723 773 FunFam RING-type E3 ubiquitin transferase 8 102 - -
Vimu3g02723 773 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 569 611 IPR000225 GO:0005515
Vimu3g02723 773 Pfam U-box domain 377 459 IPR003613 GO:0004842|GO:0016567
Vimu3g02723 773 PANTHER U BOX DOMAIN-CONTAINING 34 762 - -
Vimu3g02723 773 ProSiteProfiles U-box domain profile. 376 462 IPR003613 GO:0004842|GO:0016567
Vimu3g02723 773 SMART arm_5 517 557 IPR000225 GO:0005515
Vimu3g02723 773 SMART arm_5 681 721 IPR000225 GO:0005515
Vimu3g02723 773 SMART arm_5 558 598 IPR000225 GO:0005515
Vimu3g02723 773 SMART arm_5 640 680 IPR000225 GO:0005515
Vimu3g02723 773 SMART arm_5 599 639 IPR000225 GO:0005515
Vimu3g02723 773 Gene3D - 664 768 IPR011989 -
Vimu3g02723 773 Gene3D - 477 663 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02723 Vimu-Chr3 41518193 41521754 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02723 11 93 U-box Gene Family AT3G54850 46.988 9.96e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02723 - - gmx:100777452 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02723 3 41518193 41521754 Vimu3g02723 3 41518193 41521754 ECH