Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02709 ATGGCAGCAGCTTCCTCATCCACTCCATTCTTGGGAATCAGAGAAGAAAGCCCTCAGATTACAGCACACCATCAACCCTCCACTGTGGCTCCAATCACAGTGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCAAGCAAAAAGATTATTCTTCTGTTTGTTGTGCGTATTCAATTTGAGCAAGTGATTAAAGCAAAAGGGTTTTTTAATAATTTGTTGTTTGTCATTTTTATGGGGGTAAAAGATCCAGACGCAGAGGTGATAGAACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAATAAAGGATTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACCTTCCTTGGAAGCTAAAGCAGAAGAGTACAAAAGAGCAAAAAAGAAAGGTTTATCTTTGTCCCGAGCCCACCTGTGTCCATCATGATCCTTCAAGGGCCTTGGGAGACCTCACTGGGATCAAGAAGCACTACTCTCGCAAGCATGGTGAAAAGAAATGGAAGTGTGAAAAGTGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGCACTCTCTTCTCTAGGCGTGACAGTTTCATCACTCATAGGGCGTTCTGTGATGCGCTGGCACAAGAGAGTGCAAGATTCCCCAGTAACATAAACCCTTTGGGGAGTCATTTGTTTGGCACAAACCACACTAGTTTAACCCTATCCCAAGTGGGTAATCAACTTTCCCAAGTTCAAAATCAGAACCAAACAACCTCTAACAACATCTTGCGCCTTGGAAATGTTGGTGCAGCTGTAAAGTTTGAGCACTTGATTCCACCTCTAAATCAGTCTTCATTTGGACACTCACCACAATCAATGCCTTCTTCAGCTTTCTTCATGAATGACACCACCAATCAAACATTATTTGAAGAACACCAATCGCAACAAGGACCAATATTCTCAAACAAACAACTACATGGCCTAATGCAGCTCACTGATCTTCATGCCAACACCAACAACTCCGATTCTTCATCAGTTGCTGCTCCTGATTCCAATCTTTTCAACCTCAGCTTCTTCCCTAGTAGCAATAGCACTAGCACCATTATCTCTGATCAATTCAACAACATAAGCGGTAGTGACCACGGAACAACACCACCACCACTCTACGTTAATAACAACCCTGCAGTCACTGACCATCTTGGTTCGGGTTTTTCTTCTCTCTTTGGTGATTCATTAGAAAACTTATCCTCCCCTCATATGTCTGCCACTGTGTTGCTTCAAAAAGCGTCACAAATGGGTTCGACCACAACCTCCGGCGGTTCTTCTTTACTTAGAGGAATGTGTAGCAATAATGGTTCCAAAGCTGAAAACGGTCACCACCACCACAGTCTTCAAGGGTTGATGAACTCTATCGCCAATGGAAACACGTCCTTGTTTAGGAACATGCAAGGGAACGAAAACAACCTTTGTGGCTTTCACAACCTGGACGAGTCCAGCAATAAGTTGCCCCAGAATCTTAGTGTAAACTTTGGAGGTTCTGATAAGTTGACCTTAGACTTTTTGGGTGTTGGAGGAATGGTGAGAAATATGAATGGTGGATTTTCACAGAGAGAACAACTACAACAACAACGTGTCATGGGTACTGAGTTCTTTGGACCTTGA 1710 0.4333 MAAASSSTPFLGIREESPQITAHHQPSTVAPITVPQKKRRNQPGTPSKKIILLFVVRIQFEQVIKAKGFFNNLLFVIFMGVKDPDAEVIELSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEQKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARFPSNINPLGSHLFGTNHTSLTLSQVGNQLSQVQNQNQTTSNNILRLGNVGAAVKFEHLIPPLNQSSFGHSPQSMPSSAFFMNDTTNQTLFEEHQSQQGPIFSNKQLHGLMQLTDLHANTNNSDSSSVAAPDSNLFNLSFFPSSNSTSTIISDQFNNISGSDHGTTPPPLYVNNNPAVTDHLGSGFSSLFGDSLENLSSPHMSATVLLQKASQMGSTTTSGGSSLLRGMCSNNGSKAENGHHHHSLQGLMNSIANGNTSLFRNMQGNENNLCGFHNLDESSNKLPQNLSVNFGGSDKLTLDFLGVGGMVRNMNGGFSQREQLQQQRVMGTEFFGP 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02709 569 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 554 IPR031140 -
Vimu3g02709 569 FunFam protein indeterminate-domain 5, chloroplastic-like 156 235 - -
Vimu3g02709 569 Pfam Zinc-finger double-stranded RNA-binding 102 124 IPR022755 -
Vimu3g02709 569 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Vimu3g02709 569 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 124 IPR013087 -
Vimu3g02709 569 Gene3D Classic Zinc Finger 156 234 - -
Vimu3g02709 569 SUPERFAMILY beta-beta-alpha zinc fingers 101 198 IPR036236 -
Vimu3g02709 569 MobiDBLite consensus disorder prediction 21 41 - -
Vimu3g02709 569 MobiDBLite consensus disorder prediction 21 44 - -
Vimu3g02709 569 FunFam protein indeterminate-domain 12-like 81 149 - -
Vimu3g02709 569 Gene3D Classic Zinc Finger 82 152 - -
Vimu3g02709 569 SMART c2h2final6 178 198 IPR013087 -
Vimu3g02709 569 SMART c2h2final6 143 173 IPR013087 -
Vimu3g02709 569 SMART c2h2final6 102 124 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02709 Vimu-Chr3 41366127 41369592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02709 36 548 IDZ Gene Family AT2G02070 43.929 1.92e-118 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g02709 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02709 K25870 - gmx:100780268 792.341