Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02708 ATGGGAAGAAAGGGAAATTGTGAGAATCAATATGCTATGAACAGAGGTCCTTGGTCTGCTGAAGAAGACAAAATTCTTATGAACTACGTTCAAGTCCACGGAGAAGGTAAATGGAGAGAGCTTTCCAAAAGAGCAGGGTTGAAAAGATGTGGCAAGAGTTGTAGACTTCGATGGCTGAATTATCTAAAACCAGATATTAAGAGAGGAAACATTTCATCTGATGAAGAAGATCTCATTATCAGATTACATAAACTCTTAGGGAATAGATGGTCTCTCATTGCGGGACGATTACCAGGGAGAACAGACAACGAAATTAAGAACTACTGGAATACTTATTTGAGAAAGAAGGTAGAGCACAAGCACAGTCAAAACGACAACATTCCTATCAACTTAAGCTCGAAAAGTTCCTTGGGTGATGTTCTTGATCCTACAAAATCCGCTCACCCAATGATGATTAAGCCCAAATCAATGAGGTGTACCAAGGTTATGATGCCAGGCAATGATTCGGTGAACACGATGAATTTGATCGCGACGACCTGGGACCATAACCCTTCTGCATCCATGCCACAAGATGAACATAACCACTGTTTAACCGGTGTTCTTCAAGACTTTGACATCGGTGACTTTTTAATGTCGTACGAGGATGATTGTCGTTTCAATGGGTATGCTTGTGTTGAAATACCCCAACATATTTTTGATGATCAGACTTGGAGGCTTGATGATTCCATGGTTGAAGCAACCTGGTACGAGAATTGGAAGCACGACGCCTACTTTTCACAAGAACAAGATATGGACATGGATATGGGTTTTTCTTCATTTTAA 822 0.4063 MGRKGNCENQYAMNRGPWSAEEDKILMNYVQVHGEGKWRELSKRAGLKRCGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKKVEHKHSQNDNIPINLSSKSSLGDVLDPTKSAHPMMIKPKSMRCTKVMMPGNDSVNTMNLIATTWDHNPSASMPQDEHNHCLTGVLQDFDIGDFLMSYEDDCRFNGYACVEIPQHIFDDQTWRLDDSMVEATWYENWKHDAYFSQEQDMDMDMGFSSF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02708 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vimu3g02708 273 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vimu3g02708 273 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vimu3g02708 273 FunFam MYB-related transcription factor 14 67 - -
Vimu3g02708 273 Gene3D - 15 67 - -
Vimu3g02708 273 SMART sant 14 64 IPR001005 -
Vimu3g02708 273 SMART sant 67 115 IPR001005 -
Vimu3g02708 273 FunFam Transcription factor TT2 71 137 - -
Vimu3g02708 273 CDD SANT 72 113 IPR001005 -
Vimu3g02708 273 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vimu3g02708 273 Gene3D - 72 136 - -
Vimu3g02708 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 62 IPR017930 -
Vimu3g02708 273 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vimu3g02708 273 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Vimu3g02708 273 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 161 - -
Vimu3g02708 273 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02708 Vimu-Chr3 41357018 41358022 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02708 7 117 MYB Transcription Factor Family AT3G13540 72.072 2.70e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu3g02708 Myb_DNA-binding 8.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02708 K09422 - gmx:100794570 461.07