Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02706 ATGACAGCAGAAGGAATTGGTAATTGGCCTGAAGCTTTTTTAAGAGATGACGAAGCATATGATGAAATTAGAGAGGTTAGTGAAGATGATGAAATTGAAGAAATCTTCAATGAACCTTTGCCTGAAGGCGAATATGCCAATGACTCAACTCTTTACAAAGAAAAGGAGGAGCGCACTACCGTCTACCAGTCTCATTTCAGAAGCCATACTGTTGTCGTGGTCGCCAACTACAAAAGAGAGCTAGTTAAGATGAAAAGAAAGGGAGCTTATGAGAACCAAGAAGCTGTGAACAGAGGTCCTTGGTCTGCTGAGGAAGACCAAATTCTTATTAACTACGTTCACCTCCATGGAGAAGGAAAATGGGGGCAGATTTCCAGAAGAACTGGTTTAAAACGAGGAGGAAAAAGTTGCAGACTTCGATGGTTGAATTATCTAAAGCCAGATATCAAGAGAGGAAACATCTCTTCGGATGAAGAAGATCTCATTATCAGACTACATAGCCTCTTAGGGAATAGATTGCCTGGGCGAACAGACAATGAAATCAAGAACTATTGGAATACTTATTTGAGAAAGAAAGTAGAGGAGAAACACAATGATAACAACAACAACATTCCTGTGGAATTAAGAATGGAATCTCCAAACGCTTTTGGTATTGCTATTGATCCTGCGAAATCTTCTGAAGCAGTGATGTGTACAGAGGTTATGATGGCAACTGAAGCAGTGAATGATTCAGTGAATGCAAAAAGTTTAATTTCAACAAATTATAATGAAAACCCATTTGCGTCTGTCCCAGCAGATCATCCAGAAGGTTTGGGCAAACAGTTTGATTTAACTGAGCTGTTAATGCCGCAGGAGGATTGTGATTTCAATGGATATGCTTGTGTTGAAATACCCCCACATTTTGGAGAACACTCCTGCAGGGTTAATGATGCCATGTGTGAAACATGGTACGATGATTGGAAGAATGAAGACTATTTTCCTCTAGATTATGATATCGATTTTCCTTTATTTTAA 1014 0.3925 MTAEGIGNWPEAFLRDDEAYDEIREVSEDDEIEEIFNEPLPEGEYANDSTLYKEKEERTTVYQSHFRSHTVVVVANYKRELVKMKRKGAYENQEAVNRGPWSAEEDQILINYVHLHGEGKWGQISRRTGLKRGGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHSLLGNRLPGRTDNEIKNYWNTYLRKKVEEKHNDNNNNIPVELRMESPNAFGIAIDPAKSSEAVMCTEVMMATEAVNDSVNAKSLISTNYNENPFASVPADHPEGLGKQFDLTELLMPQEDCDFNGYACVEIPPHFGEHSCRVNDAMCETWYDDWKNEDYFPLDYDIDFPLF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02706 337 FunFam Myb transcription factor 98 150 - -
Vimu3g02706 337 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 84 214 - -
Vimu3g02706 337 ProSiteProfiles Myb-like domain profile. 93 145 IPR001005 -
Vimu3g02706 337 Gene3D - 154 212 - -
Vimu3g02706 337 Pfam Myb-like DNA-binding domain 98 145 IPR001005 -
Vimu3g02706 337 SUPERFAMILY Homeodomain-like 97 185 IPR009057 -
Vimu3g02706 337 SMART sant 150 191 IPR001005 -
Vimu3g02706 337 SMART sant 97 147 IPR001005 -
Vimu3g02706 337 CDD SANT 100 145 IPR001005 -
Vimu3g02706 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 150 193 IPR017930 -
Vimu3g02706 337 Gene3D - 89 151 - -
Vimu3g02706 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 149 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02706 Vimu-Chr3 41330465 41337224 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02706 91 213 MYB Transcription Factor Family AT5G52600 58.462 1.07e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu3g02706 Myb_DNA-binding 9.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02706 K09422 - gmx:547459 347.051