Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02705 ATGACTGAAGAAAGTGCTGGAAACACAGTTGCAACCTCTATCACCCCATTAAACTGGTGGTATCTCCAGGCAAATTCTATTTCTTCCTGGAACGATACTAATAACACATGGAACAACCAACCAAACCCTAATTCTTCCTCTTCTTGTGAAGAGGATATATCTGTTTCTACATCTTTCACTAATGCTTCCAACCATTCAACCCTCACTGTTGAGTCCTCTCGCAGACTCATTGACCCTCCTGCTCCTTCCTCCAACGAGTTCATGGGAGAACATGCTTCGGATAATCAACTTTGGACCCATGTTCTATCAGGTGTTGGATCTAACGGCGAGTTACAGAGCGGCCAAGATATTGGAGAGAACTTTCTGGGTGCACTGTCATCAAAAAGCATGACAAGCACTATGTTTCAACCAGTCTGTGACTACTTGAAGAAACTTGATCATACCAGTTGGGAATATAGTGGTTCAACTTCATTAAACAGTTATGAGAAGCATTTAAATGGGTTCAGTGAGGCGATGATTGAGAATAATGAAAGGTTGACCAAGTTATCTAATCTTGTAAGCACTTGCTCTATTGCCCCGCCAGACCCGGAGGTAAGTAGCCACTTTGATCCACAAACAAACAACATGACCTTGAATTCTTCCATGGATCATTTCCCACAATCTGATCACTTCAAGCAACCTTTTGGAGACTCCACATGCTCTCTTGGAGGAGTAGCAAACAGAAATTCTGGAGTGTTCCCATCCTATGATCATGACACCAAGATCAAGCAAGAGTTTCATGCAAGTGAAGTGCAAGGATCTGTATATGGAAAATCATTAAATGCAAATGGGTATCAAAATGGATTTAATGGCTTTTCAGTGGGTGATAGTTGCAAACTCTACCATGGGATGCCCAATCTTCCTCCATGCACAAGAAATTTCTCAGATGTTATATCCTTTAATAGTCGATTTGGAAGGCCAGTTATTGGAATCCATGCTCAGAAGCCTAGCATGAAGTATCCGAACGTATCTGAACCAAAGAAACAGGGTCTTCAAGCACCATCACCGATAAGAAGTAATATTAATGGAAAAGGGGAGGGCACAACACGTGAAGTAAAGAAGAAAAGATCAGAAGAATCTTCAGATGCAATGTTAAAAAAGCTTAAGCAAGATACATCAACAGTTTCTTCTTCAAAGGTGCAGGCACCCAAAGTCAAGCTAGGGGACAAAATCACAGCCCTTCAGCAAATTGTGTCTCCATTTGGAAAGACAGATACTGCATCTGTGCTGTTTGAAGCAATAGGGTACATAAAGTTTCTTCAAGAACAAGTCCAGTTTCTTTCATGCATGCGTAACTTGCAGCTACTGAGCAACCCTTACTTGAAGGCTAACTGTCACAAGGATCCATGGGGAAGCTTGGATAGAAAAGATAAGGACGATACAAAGCTAGATCTTCGGAGCAGAGGTCTTTGTTTAGTTCCTACTTCATGTACTCCTCTAGTTTACAGAGAGAGCAGTGGACCAGACTACTGGACACCAGCATACAGAGGATGTTTGTATAGGTGA 1545 0.4188 MTEESAGNTVATSITPLNWWYLQANSISSWNDTNNTWNNQPNPNSSSSCEEDISVSTSFTNASNHSTLTVESSRRLIDPPAPSSNEFMGEHASDNQLWTHVLSGVGSNGELQSGQDIGENFLGALSSKSMTSTMFQPVCDYLKKLDHTSWEYSGSTSLNSYEKHLNGFSEAMIENNERLTKLSNLVSTCSIAPPDPEVSSHFDPQTNNMTLNSSMDHFPQSDHFKQPFGDSTCSLGGVANRNSGVFPSYDHDTKIKQEFHASEVQGSVYGKSLNANGYQNGFNGFSVGDSCKLYHGMPNLPPCTRNFSDVISFNSRFGRPVIGIHAQKPSMKYPNVSEPKKQGLQAPSPIRSNINGKGEGTTREVKKKRSEESSDAMLKKLKQDTSTVSSSKVQAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKFLQEQVQFLSCMRNLQLLSNPYLKANCHKDPWGSLDRKDKDDTKLDLRSRGLCLVPTSCTPLVYRESSGPDYWTPAYRGCLYR 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02705 514 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 152 492 - -
Vimu3g02705 514 MobiDBLite consensus disorder prediction 331 388 - -
Vimu3g02705 514 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 384 433 IPR011598 GO:0046983
Vimu3g02705 514 MobiDBLite consensus disorder prediction 33 53 - -
Vimu3g02705 514 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 399 441 IPR036638 GO:0046983
Vimu3g02705 514 CDD bHLH_AtbHLH_like 399 441 IPR045239 -
Vimu3g02705 514 MobiDBLite consensus disorder prediction 360 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02705 Vimu-Chr3 41317202 41320437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02705 23 514 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 33.333 5.06e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02705 - - vum:124830975 891.338