Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02693 AAGTTCTTCTCTTTTGTCCATTGTTGCTTTTGCTTTCTGCTTGGAGAAATGCTGGTTCGGAGGAGGGTGATGAGTTGGAGAAGGGTGGCGAAGGCCCTGCAAGCTCTGGTAGCTCATGCTTTGCTTTTCTCTTTCACTCTTCTCCTTGTTCTCAAGCTTGACCATCTCCTTCCTGACTCATGGACATGGTGGAAAGTATTTTCTCCTCTATGGCTTTTTCATGCTGTGGTGGCACGAGGCAGGTTTTCCTTGCCTGCTCCTTCTATTCCTCACGATCGGCGATGGGCTCCTTTTCATTCACTCGTAGCAACTCCACTACTTGTTGCATTTGAGCTACTTCTTTGTATACATCTCGGGAGCAGTTATGATATGAATTTAAGGATTGTCTTCATGCCCCTGGTATTTTTTGAAATGGTGGTTTTGTTTGATAACATCAGGATGTGTAGGGCTTTGATGCCTGGGGATGATGAAAATTTGACCGATGAAGCAGTATGGGAAACTCTTCCTCACTTCTGGATTTCAATATCCATGGTCTTCTTGATTGCTGCCACAGTGTTCACCCTTCTAAAGATATGTGGTGATGTTGCTGCTCTAGGCTGGTGGGACTTATTTATTAACTATGGGATTGCACAGTGCTTTGCCTTTCTTGTTTGTACTAAGTGGCATAATCCTACTATACATGGAGGCTGTCACATCACAGAACCATGTTCATCATCAAATACCATAAGATACCTAGACATGAGTAGAGGACGCTTAGTTACTTATGCGGATGAAGATAGGGAGCAAAATGGGTTCTGCAATCTGCAGGATATTGGTGGGCATATCATGAAAATTCCATTCATTGGTTTTCAAATACTTCTTTTTATGCATTTAGAGGGAACGCCATCCAGTGCAAAAAATCTGCAACATTGGGTCATTTTTTCACCACTTTTTTTGTTGCAAGGAGCTGGGGTTTTATTTGCTGCATATAGATTAATAGAGAAGATAGTTCTTTTACTCTACAGTGGAGATATTCCTGAAAGATACTCATCTATAGCATCAAAATCTCGTGAGTGCTTTGGGTTCTTTCGACATGGCTCAAGGTTACTTGGTTGGTGGTCAATAGATGAAGGAAGTAAAGAGGAAGAAGCTAGACTATTTTTTTCTGGGAGTTCTGGGTATAATACTTTTACCCCTGATACAGTGAAGAAAATGCCTAGAGCAGATCTGGTTGAGGAGATTTGGAGATTACAAGCTGCACTGGGTGAGCAAACAGAAGTTACAAAATTTAGCCAGGAGGAGTATGAAAGGCTTCAAAATGAGAAGATCTTATGTAGAATTTGCTTCGAAGAGCAGATTAACGTGGTCCTCCTTCCTTGTAGGCATCACATTATTTGCAGCACCTGCTGCGAAAAATGTAAACGGTGCCCTGTCTGCCGTGGCACCATTGAAGAAAGGATGCCTGTATATGATGTGTAG 1458 0.4218 KFFSFVHCCFCFLLGEMLVRRRVMSWRRVAKALQALVAHALLFSFTLLLVLKLDHLLPDSWTWWKVFSPLWLFHAVVARGRFSLPAPSIPHDRRWAPFHSLVATPLLVAFELLLCIHLGSSYDMNLRIVFMPLVFFEMVVLFDNIRMCRALMPGDDENLTDEAVWETLPHFWISISMVFLIAATVFTLLKICGDVAALGWWDLFINYGIAQCFAFLVCTKWHNPTIHGGCHITEPCSSSNTIRYLDMSRGRLVTYADEDREQNGFCNLQDIGGHIMKIPFIGFQILLFMHLEGTPSSAKNLQHWVIFSPLFLLQGAGVLFAAYRLIEKIVLLLYSGDIPERYSSIASKSRECFGFFRHGSRLLGWWSIDEGSKEEEARLFFSGSSGYNTFTPDTVKKMPRADLVEEIWRLQAALGEQTEVTKFSQEEYERLQNEKILCRICFEEQINVVLLPCRHHIICSTCCEKCKRCPVCRGTIEERMPVYDV 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02693 485 SUPERFAMILY RING/U-box 429 480 - -
Vimu3g02693 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 413 484 IPR013083 -
Vimu3g02693 485 Pfam Transmembrane Fragile-X-F protein 51 313 IPR019396 -
Vimu3g02693 485 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 24 485 - -
Vimu3g02693 485 ProSiteProfiles Zinc finger RING-type profile. 438 473 IPR001841 -
Vimu3g02693 485 Pfam Zinc finger, C3HC4 type (RING finger) 436 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02693 Vimu-Chr3 41088991 41096533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02693 24 485 C3H Transcription Factor Family AT1G73950 62.553 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02693 - - gmx:113000756 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02693 3 41088991 41096533 Vimu3g02693 3 41088991 41096533 ECH