Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02690 ATGAAGCTTTCGTTTTCCGTCCCCTCATCGAAATCCCAATCGAAGCCCAAACCCGTCAATACCTTCGACGACACTTCCACCGCCCAAAACGACGCTGACGGATCCAAACACCTCATCACCGAATTCGATTCTTCCAAACCCGCTCCCTCCCTCGCCCCCAAAATCCTAATTCCGCCAATCCAAAACGAATGGAAACCCTTTAAGAAGATGAAGAACCTCCACCTCCCCACCGCCGACCCTGAATCCGAGCCCCTTACATTCGAAGTCCACGCCGCCGACGGCCAACCCGACTCCGACGTCTCCTATGGCCTCAACCTCCGCACCGACAAAAAAACTGAGCAAAACAACGGCACCGCACTTCCGCCGCCGCCGCGCCGCGTTCCGGTGGAGGGCACGATGCTGCAGAAGCTGAAGGACGACATGGAGAGGTTACCGGAGGATCAGGGGTTTGACGAATTCAAGGATGTCCCGGTCGAGGGTTTTGGCGCGGCGCTGCTGGCCGGGTACGGGTGGAAGGAAGGTATGGGGATTGGAAAGAACGCGAAGGAGGACGTGAAGATTAGTGAGATCAAGCGGAGAACTGCCAAGGAAGGATTGGGTTTTGTTGGTGATGCTCCTGCTGCGCTGGTTCGGAGTAGCAATGACAAGGACACGAAGAAGAATGAGAAGAAGGAGAAGGTTGTTAGGATTGTTGGGGGAAGAGATGCTGGGAGGAAGGGTACCGTTGTGTATAGTATTGGTGATGATTATCTTGTTTTGGAGCTATCCAGAAGTGAAGAGAAGGTGAAAGTGAAGGTGGGGGATGTTGCTGAATTGGGTTCTAAGGATGAAGAGAGGTGTTTGAGGAAATTGAAGGAGTTGAAGATTCAGCGTGAGGATAGAGGGCCAAAAAGGAAGCGCGACAGGGATGAGGTGGAGAATAGAGTGGATGTTAGTCGGAGAGAGGAGAGGAAAGGGGTGGGTCGTAGGGATGTGGTTGAGGAGAAGAGAATGGATGGTGGTAGGAGAGAGGAGAGGAGAGTGGTGGATCAGAGGAAGGTTTCTTGGCTTACTAGTCACATTCGAGTGAGGGTGATTAGCAGGGATTTGAAAGGAGGGCGGTTGTATTTGAAGAAGGGGGAGATTCTGGATGTTGTTGGACCTACCACTTGTGATGTATCTATGGATGAGAGCAGGGAGATTGTTCAAGGGGTGTCCCAAGATTTTCTGGAGACGGCAATTCCGAAACGTGGGGGAGCTGTGCTTGTGTTAGCTGGTAAATACAAGGGTGTATTTGGGAGTCTGGTGGAGAGGGATTTGGAGCGGGAAATGGCCACTGTTAGGGATGCTGATACCCATGAGCTGCTAAATGTGAAGCTTGAACAGATTGCGGAGTATATAGGGGACCCAAGCTTGTTGGGACATTGA 1407 0.5203 MKLSFSVPSSKSQSKPKPVNTFDDTSTAQNDADGSKHLITEFDSSKPAPSLAPKILIPPIQNEWKPFKKMKNLHLPTADPESEPLTFEVHAADGQPDSDVSYGLNLRTDKKTEQNNGTALPPPPRRVPVEGTMLQKLKDDMERLPEDQGFDEFKDVPVEGFGAALLAGYGWKEGMGIGKNAKEDVKISEIKRRTAKEGLGFVGDAPAALVRSSNDKDTKKNEKKEKVVRIVGGRDAGRKGTVVYSIGDDYLVLELSRSEEKVKVKVGDVAELGSKDEERCLRKLKELKIQREDRGPKRKRDRDEVENRVDVSRREERKGVGRRDVVEEKRMDGGRREERRVVDQRKVSWLTSHIRVRVISRDLKGGRLYLKKGEILDVVGPTTCDVSMDESREIVQGVSQDFLETAIPKRGGAVLVLAGKYKGVFGSLVERDLEREMATVRDADTHELLNVKLEQIAEYIGDPSLLGH 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02690 468 MobiDBLite consensus disorder prediction 292 313 - -
Vimu3g02690 468 SMART G-patch_5 156 202 IPR000467 GO:0003676
Vimu3g02690 468 Pfam G-patch domain 145 201 IPR026822 -
Vimu3g02690 468 ProSiteProfiles G-patch domain profile. 158 204 IPR000467 GO:0003676
Vimu3g02690 468 MobiDBLite consensus disorder prediction 1 54 - -
Vimu3g02690 468 PANTHER G PATCH AND KOW-CONTAINING 1 464 IPR045166 GO:0000398
Vimu3g02690 468 MobiDBLite consensus disorder prediction 108 129 - -
Vimu3g02690 468 MobiDBLite consensus disorder prediction 1 34 - -
Vimu3g02690 468 SMART kow_9 221 248 IPR005824 -
Vimu3g02690 468 SMART kow_9 407 434 IPR005824 -
Vimu3g02690 468 Gene3D - 353 407 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02690 345 441 C2H2 Transcription Factor Family AT1G55460 32.990 6.44e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02690 K13101 - gmx:100784983 661.373