Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02685 ATGCAGAAAACATACTCTTTCTCCTGCATATCCTCGTGTGGCAGTGATAGTGCCGGCTTAGAAGCTGACGAGGTTGGCAATGAAGATTCCATTTCCCTCTCCCTTGGCCCTCCTTGCCACCACAAATCCCAAGTCCTTAACCCAAAACACACTTCTGCCGTGCCTGTTCATCAGAAAAACCCTACCTCCGATGACCCCACTGCTGTAACAGTTGCCCTCCACATCGGCCTTCCCACAACCGCTACCAAAACTTCTTCCACTCCGACTCATGCCCGATATTGGATCCCTACTACTCAACAAATCCTTATTGGACCCACTCAATTCTCTTGCACAGTCTGCAACAAAACGTTCACCCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCAGAGTATAGGAAAGGGTCGGAGTCATTGAGAGGGTCAAAAGCAGGTTCTTCAATGCTGAGGCTGCCCTGCTACTGCTGTGAAGAGGGTTGCAGAAACAACATAAACTATCCAAGGTCAAGGCCACTGAAGGATTTCAGGACCCTCCAAACACACTACAAGAGGAAGCACGGAGGGAAGCCATTCGAGTGCAGGAAATGTAAAAAGGCATTTGCAGTGAGAGGTGATTGGAGAACACACGAGAAGAATTGTGGGAGGCTTTGGTTCTGCATCTGTGGTTCTGATTTCAAGCACAAGCGGTCCCTGAAAGATCATGTCCGTGCATTTGGCAATGGGCATGCTCCACACAGCTTGGGAGAAGAAAGAGGCAGTGATGAGAGTGAAATGGTGTATTTAGTTTGA 795 0.4855 MQKTYSFSCISSCGSDSAGLEADEVGNEDSISLSLGPPCHHKSQVLNPKHTSAVPVHQKNPTSDDPTAVTVALHIGLPTTATKTSSTPTHARYWIPTTQQILIGPTQFSCTVCNKTFTRFNNMQMHMWGHGSEYRKGSESLRGSKAGSSMLRLPCYCCEEGCRNNINYPRSRPLKDFRTLQTHYKRKHGGKPFECRKCKKAFAVRGDWRTHEKNCGRLWFCICGSDFKHKRSLKDHVRAFGNGHAPHSLGEERGSDESEMVYLV 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02685 264 SMART c2h2final6 193 213 IPR013087 -
Vimu3g02685 264 SMART c2h2final6 108 130 IPR013087 -
Vimu3g02685 264 SMART c2h2final6 156 188 IPR013087 -
Vimu3g02685 264 SUPERFAMILY beta-beta-alpha zinc fingers 99 131 IPR036236 -
Vimu3g02685 264 Pfam Zinc finger, C2H2 type 108 127 IPR013087 -
Vimu3g02685 264 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Vimu3g02685 264 Gene3D Classic Zinc Finger 107 130 - -
Vimu3g02685 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Vimu3g02685 264 SUPERFAMILY beta-beta-alpha zinc fingers 178 213 IPR036236 -
Vimu3g02685 264 Gene3D Classic Zinc Finger 132 218 - -
Vimu3g02685 264 PANTHER ZINC FINGER PROTEIN WIP2 31 249 IPR043584 GO:0003700|GO:0010468
Vimu3g02685 264 FunFam Zinc finger protein WIP2 162 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02685 Vimu-Chr3 41000526 41001922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02685 26 251 C2H2 Transcription Factor Family AT1G13290 66.809 3.86e-116 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g02685 zf-C2H2_6 0.0012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02685 - - gmx:100784037 454.521