Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02683 ATGTATTTCTTCACTGAGAAAATGCAGCGTTTGAAGATGGGGTTTCCTGACTACATCCAGGCATTGGAAGAAGAACGCCGTAAGATTCAGGTCTTCTGCAAAGAGCTTCCTCTTTCCTTCGAGCTAGTTACTCAAGCCATTGAAGCTTGCAGACAACAATTGTCTGGCACCACTAGCGAGTATAATTTGAATGGTCAGTCGGAGTGTTCGGAGCGGACAACATCATCGGAGGGACCAGTCTTGGAGGAGTTCATTCCGATCAAGAAAAGGGCATCATCATCCCCCTGTTGCGATGAAGATGACGAAGACTATGAACAGCATTCTCTCAGGCAAACGGTTTTAAATGAGGATAATAAGAACAGTGATAAGAGGAAATCCGACTGGCTCAGATCTGTTCAGCTGTGGAATCCAGATCCCCCAGCTGAGGAGGATGCGACTAAGAAAGTTCCTGGGATGGAATTGAAGAGAAGTGGGAGCGGTGGTGGTGCTTTCCAGCCATTCCACAAGGAAGAAAGAGCTGCAAAGCCAACTGAAACATTGTATAAAGCACCCTCTTCAACTCGGGTAGCTGCTGCGAGTTCTAGCGCCGGAGAACTCACCCCAGAAAAAAATCAGAATGAGGGACAGAGAAAGCAGCGCAGATGCTGGTCTCAGGATTTACACAAGCGCTTCTTGCATGCCCTTCAGCAGCTTGGGGGTGCAGATTCTGCCACACCAAAACAAATCCGAGAGCTAATGAATGTTGACGGTCTCACAAATGATGAAGTGAAAAGCCATTTACAGAAATACCGTTTGCACACCAGAAGGCCAAGTCCCTTGGTTCACAACAGTTCCAGTCCACAAGCAGCGCCTTTTGTCCTTGTAGGGAACATTTTTGTTCAGTCACCAGAATATGCTGCTGTAGCTACCTCAACAGCATCAAGAGAAGTGACCACAGTTACAGCACCTGCTGGAGTTTATGCACCAGTGGCCACACATCCTACGCCTGTTTCACAACCATCAGCCGATTCAATTAAGAAGCCACAGTTTAAGAAATTTAAGCATTCTGAACATTCAAATTCAGATGAAAGGGGTCATCACAGTGAAGGAGCTGTTCATTCAAATTCCCCTACCTCATCCTCCTCTACACACACCTCTGCTTCCCCTAGTTATTAA 1155 0.4667 MYFFTEKMQRLKMGFPDYIQALEEERRKIQVFCKELPLSFELVTQAIEACRQQLSGTTSEYNLNGQSECSERTTSSEGPVLEEFIPIKKRASSSPCCDEDDEDYEQHSLRQTVLNEDNKNSDKRKSDWLRSVQLWNPDPPAEEDATKKVPGMELKRSGSGGGAFQPFHKEERAAKPTETLYKAPSSTRVAAASSSAGELTPEKNQNEGQRKQRRCWSQDLHKRFLHALQQLGGADSATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPLVHNSSSPQAAPFVLVGNIFVQSPEYAAVATSTASREVTTVTAPAGVYAPVATHPTPVSQPSADSIKKPQFKKFKHSEHSNSDERGHHSEGAVHSNSPTSSSSTHTSASPSY 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02683 384 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 266 IPR006447 GO:0003677
Vimu3g02683 384 MobiDBLite consensus disorder prediction 130 214 - -
Vimu3g02683 384 Pfam Myb-like DNA-binding domain 213 264 IPR001005 -
Vimu3g02683 384 MobiDBLite consensus disorder prediction 340 363 - -
Vimu3g02683 384 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Vimu3g02683 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 268 IPR017930 -
Vimu3g02683 384 MobiDBLite consensus disorder prediction 322 384 - -
Vimu3g02683 384 MobiDBLite consensus disorder prediction 364 384 - -
Vimu3g02683 384 FunFam Myb family transcription factor 210 268 - -
Vimu3g02683 384 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 6 344 IPR044787 GO:0003700|GO:0006355
Vimu3g02683 384 Gene3D - 210 268 - -
Vimu3g02683 384 MobiDBLite consensus disorder prediction 180 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02683 Vimu-Chr3 40984151 40985956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02683 4 261 G2-like Transcription Factor Family AT1G25550 53.383 3.00e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu3g02683 Myb_DNA-binding 3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02683 - - gmx:100796683 610.142