Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02672 ATGGAGCTTCTCTCTGTGACTGGCACACTCTGCAAAGGTCAAACATTTTCCTTTCAGAAACCAAAGACATCCCAAATTCATGAACTTCCAATAAACGTAAGATTACCCAACACAATCAACCATTCCAATCTTTCTTCTTCTTCTTCATGTAATTGCTCTATTACTAGGGTAGCAGCAACAACATACCCTTCCTTCAATTCTTCCACCACACAGAACTGCCATTGGATGGTGGTCATGGACACACCTCCTCAAGGGCTCAATTCAAAGTCACTTGTCATTGATTATTATGTCAACATTCTACAAACAGTTCTCGGCAGTGAGAAAGATGCTCAGATGCGTATATATGATGCTTCGTGGGACACCCACTTCGGCTTTTGTTGTGACGTTGATGAAGAAATATCCTCCCAGCTGGCCAGTTTGCCTGGGGTGTTGTTGGTTAGGCCTGACCCGGATTTCAATTCTTTGAAAAAGGACTATAGTTTATCAAGGGACCAGGTAGTTAACCCGTCAGGATTACAAAATATTACCAATATGTTGTTTCCTGCTGGAAATTCTAAGCATTGGCTTGTTAAAATGGATAAACCTGGGGTTGAGGTTGTTACCAAGGCTCAGATTGTCGATTACTATGCTCAAATTTTGACCAAGGTCATGGGAAATGAGACGGATGCACAAATGTGTATATATCATGTCTCCTGGAAAACCAACTTCGGTTTTTGCTGTGAACTTGACGAGGACTGTGCTCAAGAGCTAGCTGGTGTGCCAGGTGTCTTATCAGTTCAGCCAGATAACAGTTTTGAGTCTGAAAATAAGGATTATGCAGGTAGTACCTTACAAAATAGTTGGAATATTTCCAACTCTTCTGAAGCAAGTCATGAAGCGCCCTTGAAAACAAAGAAATTGTTTGTGACAGGGCTATCATTTTATACATCTGAGAAAACCTTGCGTGCAGCATTTGAAGGCTTTGGTGAGCTAGTTGAAGTTAAAGTTATTATAGACAAGATTTCAAAAAGATCCAAGGGTTATGCATTTGTTGAATACACCACAGAGGAAGCTGCCAGTGCTGCGCTTAAAGAGATGAATGGCAAGATTATTAATGGCTGGATGATAGTGGTAGATGTTGCCAAGCCTAACCCGCCAAGATACAACAGGAATCGTGCTGAATCATCAAGTTGA 1173 0.4135 MELLSVTGTLCKGQTFSFQKPKTSQIHELPINVRLPNTINHSNLSSSSSCNCSITRVAATTYPSFNSSTTQNCHWMVVMDTPPQGLNSKSLVIDYYVNILQTVLGSEKDAQMRIYDASWDTHFGFCCDVDEEISSQLASLPGVLLVRPDPDFNSLKKDYSLSRDQVVNPSGLQNITNMLFPAGNSKHWLVKMDKPGVEVVTKAQIVDYYAQILTKVMGNETDAQMCIYHVSWKTNFGFCCELDEDCAQELAGVPGVLSVQPDNSFESENKDYAGSTLQNSWNISNSSEASHEAPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKPNPPRYNRNRAESSS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02672 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 376 IPR000504 GO:0003723
Vimu3g02672 390 Gene3D - 268 390 IPR012677 -
Vimu3g02672 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 366 IPR000504 GO:0003723
Vimu3g02672 390 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 180 266 IPR037045 -
Vimu3g02672 390 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 58 153 IPR037045 -
Vimu3g02672 390 FunFam Organelle RRM domain-containing protein 1, chloroplastic 176 265 - -
Vimu3g02672 390 SMART rrm1_1 299 372 IPR000504 GO:0003723
Vimu3g02672 390 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 178 367 IPR039206 GO:0016554
Vimu3g02672 390 FunFam Organelle RRM domain-containing protein 1, chloroplastic 266 390 - -
Vimu3g02672 390 SUPERFAMILY RNA-binding domain, RBD 284 385 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02672 Vimu-Chr3 40918544 40920992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02672 290 385 C2H2 Transcription Factor Family AT2G19380 31.250 1.12e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02672 - - vun:114191397 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02672 3 40918544 40920992 Vimu3g02672 3 40918544 40920992 ECH