Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02656 ATGAAGATTATTGATGACATTTCTCATTCAGATAACATTTTCCTTGTTTTGAACGTTCAATTTCATTGTTTTTGTAGATGCACAGTGTGCCTCTCAGAATATCAAGGTGAGGATATTCTGCGTATTCTTCCTTTTTGTGGACACTCCTTCCATGTGACCTGCATAGACCTATGGCTGCAGCAGAATTCCACATGTCCTGTTTGTCGAATATCATTGCGTGAATTTCCAGATAGAAAGTGGTTAATGCAACCCTTGTTCAGCTCTGCTCTGCAACCTGGTATAGAATCCTTTGACACGCATCATTATCACTGTATGATGGATGATAATGGATTATCATCAAGAACCCCTGACAACCATGGGGTGAATCCTGTGGAAGAAGATCATTTTCCATCTGAGGTTGGTGGAGCAGTTTCTATGGACAATATCACATGTTTAAGTGAGGTTGACTTCATTAAAGATGAAGGGAAGAAGCATGTAGAGAGTCCATCAAACTTCCAGAATTGA 504 0.3988 MKIIDDISHSDNIFLVLNVQFHCFCRCTVCLSEYQGEDILRILPFCGHSFHVTCIDLWLQQNSTCPVCRISLREFPDRKWLMQPLFSSALQPGIESFDTHHYHCMMDDNGLSSRTPDNHGVNPVEEDHFPSEVGGAVSMDNITCLSEVDFIKDEGKKHVESPSNFQN 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02656 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 75 IPR013083 -
Vimu3g02656 167 PANTHER OS11G0150450 PROTEIN 26 125 - -
Vimu3g02656 167 CDD RING-H2_EL5-like 26 69 - -
Vimu3g02656 167 SUPERFAMILY RING/U-box 26 75 - -
Vimu3g02656 167 SMART ring_2 27 68 IPR001841 -
Vimu3g02656 167 ProSiteProfiles Zinc finger RING-type profile. 27 69 IPR001841 -
Vimu3g02656 167 Pfam Ring finger domain 26 69 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02656 Vimu-Chr3 40808091 40809288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02656 26 76 C3H Transcription Factor Family AT4G10150 54.902 3.69e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02656 - - vum:124842952 277.715