Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02654 ATGGGTGACCCATATGGGTTGCCGGAGGATCTCCGGCGTTTTATACCACCCAGAACCCATATGAACCCTTCAAGCACGCACCTGCTTGAGCCACTGTGTCTTCACCATGGTCTCAGTCCGGTTGCTGCTGCCACTACAATTCCACCCAACACCTATGACCACAACATGGTTGGGGACGTTTTCTTCCCTCGTGCCTTCACTCACTTTTCCCATCATCATGACTATTCCTCTTCTTCTGGTGTCAACCCTACCAATGCTGCCACTGCTGCTGTCTCGGATCATGCATTCTGCAGCATGGAGAGTGCAGAGAAAGGGTGGTTTGGTTTTGATTCCGGGAACAACAGGTGGCCAAGACAGGAGACCCTTTCGCTTCTAGAGATCAGATCTCGTCTTGATTGCAAGTTCAGAGAGAATAATCAGAAAGCACCCTTGTGGAATGAGATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAGAAGTTTGAGAATTTGTACAAATATTACAAGAAGACGAAGGAAGGTAAAGCCAGTAGACAAGATGGGAAGCACTACAGGTTCTTCAGGCAGCTTGAAGCAATATGTGGAGACCAAGCAAACACAAATCATGCCTCAACTTCAGATAAAACCCATCGTGCTGGTGCAAACAATGGTAACATTCAAACACCTACCTTTGCAATTAACCAAGAACACAATGGGGATTCTAGTAATAACCCCAAGTGCTCAGAGAGCATCAGCATCTCAAACTCATCTGAATTCGAGACATCCTCGTCTGAAAACAACGAGGAGGATCTTTCAGCCATTGCATTCATGATGAGGCAGTCAAGGGAGAAGCAGAAAGCGTTGTTGGATGAAAGACAAAGTGATCACAGGAGGTTAAGAAAAAGCTGGAGAGCAAAAGTGGAGGAGATTGTGGATTCCCACATGAGGAAGATCATAGAGACGCAAGATGCTTGGATGGAGAGAATGCTGAGCGTTGTTGAACAAAGAGAGCAAGAGATGTCATCCAAGGAGGAAGAAAGGAAGAGGAAAGAGTCAATGTGGTTTGACCAACAGGTGCATGAACTGTGGGCTAAAGAGAAAGCATGGGTTGAAGCAAGAGATGCTGCATTGATAGAGGTTGTGAGGAAACACGTTGGGATAGAACTGGAAGCATTGCCCCTGGATGAAGCTATGGTTGAAGAAGCAGGAAATAAGAACAAGGGAGAAGGAAAGATTGAGAGCAGTGAATTTCCCTCCAAGGGTATGGATCAAAGAAGTAGCAGTAGGTGGACAGAAATGGAGATTTCAAATTTGATACAGCTAAGGAGTGGTTTTGAGCAACGATTCAGAGAAAATGGGTACTTGGAGAATGGGCTTTGGGATGAAATATCAGCAAAATTGGGTTGTTTGGGATTTGATAGGAGTGGAAGTGAGTGCAAGCAAATATGGGATGAGATCAGCATCTCTCTGAGAAGGACAGTGGATGAGTGTGATGGTGGGAAAAGAAGGCCTTGGTATTTGGGACTTAGGGTGACGGATGATGATGATCTTTGA 1557 0.4534 MGDPYGLPEDLRRFIPPRTHMNPSSTHLLEPLCLHHGLSPVAAATTIPPNTYDHNMVGDVFFPRAFTHFSHHHDYSSSSGVNPTNAATAAVSDHAFCSMESAEKGWFGFDSGNNRWPRQETLSLLEIRSRLDCKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGDQANTNHASTSDKTHRAGANNGNIQTPTFAINQEHNGDSSNNPKCSESISISNSSEFETSSSENNEEDLSAIAFMMRQSREKQKALLDERQSDHRRLRKSWRAKVEEIVDSHMRKIIETQDAWMERMLSVVEQREQEMSSKEEERKRKESMWFDQQVHELWAKEKAWVEARDAALIEVVRKHVGIELEALPLDEAMVEEAGNKNKGEGKIESSEFPSKGMDQRSSSRWTEMEISNLIQLRSGFEQRFRENGYLENGLWDEISAKLGCLGFDRSGSECKQIWDEISISLRRTVDECDGGKRRPWYLGLRVTDDDDL 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02654 518 CDD GT1 114 180 - -
Vimu3g02654 518 MobiDBLite consensus disorder prediction 207 268 - -
Vimu3g02654 518 SMART sant 112 175 IPR001005 -
Vimu3g02654 518 SMART sant 427 490 IPR001005 -
Vimu3g02654 518 ProSiteProfiles Myb-like domain profile. 114 173 IPR001005 -
Vimu3g02654 518 Gene3D - 431 493 - -
Vimu3g02654 518 Gene3D - 116 178 - -
Vimu3g02654 518 ProSiteProfiles Myb-like domain profile. 423 488 IPR001005 -
Vimu3g02654 518 Coils Coil 327 354 - -
Vimu3g02654 518 FunFam Trihelix transcription factor GT-2 431 493 - -
Vimu3g02654 518 FunFam trihelix transcription factor PTL-like 116 178 - -
Vimu3g02654 518 MobiDBLite consensus disorder prediction 406 427 - -
Vimu3g02654 518 PANTHER FI21293P1 76 505 - -
Vimu3g02654 518 CDD GT1 429 494 - -
Vimu3g02654 518 Pfam Myb/SANT-like DNA-binding domain 429 500 IPR044822 -
Vimu3g02654 518 Pfam Myb/SANT-like DNA-binding domain 114 201 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02654 Vimu-Chr3 40787866 40790273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02654 115 493 Trihelix Transcription Factor Family AT5G03680 43.112 1.96e-86 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu3g02654 Myb_DNA-bind_4 7.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02654 - - gmx:100787750 802.742