Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02646 ATGGATGATGTGCCGAAGCACCGTGCCACTCGAACAACCTCTCTCCGGGACGTCTCCGACTTCTCCAAGATGGAAGTAACTGGAAGCTGGGACGCCCTCGAATGGACCAAAATTGAGCCAATTACGCCCTTCGTCTCGAATGCGAATTTTGATTTCTTGATCGAGTCGGAGCAAGTTGTCGCCGAAGTTGTTTCTAGTGTTATTTGTGGAGAGGGACATGGTGTTGTTCTTGTTAATACAGATGATGCTGGCACATTGATGGTAACAAATTTCCGTCTTATTTTTCTGAGTGAGGGAACTAGAAAAGTTATTTCCCTTGGAACGATTCCACTAGCAACCATTGAGAAGTTTAACAAGATAGTTGTAAAGGTTCAGTCAAATAATCGTTATGTAGACAAGACACCAGCTCAGAGACTGCTCCAGGTGATTGGAAAAGATATGAGAATTTTAGTCTTCAGTTTCAGACCACGTACAAAACAGAGACGTTTGGTGTTTGATGCGCTACTGAGGTGTACAAAGCCAACAAGATTATGGGATCTTTATGCTTTTGCATCAGGACCTTCTAGGTTTAAGAACACTACTCCACTAGTCCGTTTACTAGATGAATATTGTCGGCTTCTTTGCCTAGGTTCTTATCATGCATCGATGGATATAATTGAAAATGGGTCGTTCACCTGGTCAAATGAACTATGGAGAATAAGTAGCGTGAATTCCAGTTATACAATGTGCCAGAGTTATCCATTTGCTTTGGTTGTTCCAAAGATCATTAGTGATGAAGAAGTGCTCCAGGCATCCAGCTTCCGTGCAAGATGTCGACTGCCTGTAGTTTCATGGTGCCATCCATTGACTGGAGCAGTTGTTGCACGATCTTCTCAACCCTTAGTTGGTATTATGATGAACATGAGGAGCAACATGGATGAAAAACTTGTGGCCGGACTCTGTAGCAAGCTAGATAGTGGCTCAAGGAGAAAGTTATATATTGTTGATGCGCGGCCAAGAAAAAATGCATTGGCTAATGGAGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCCGAGGTAGTCTTCTTGGGGATAGACAACATCCATGCGATGAGAGACAGCTTTGTTCGGCTCCGAGAATACATGGACACTCATGGCAGAGCGTCATCAGATGGAATGTCCTCTTTCTTGAGACAAGGTGGGTCAACGTGGGGTGGTGGCAATCTAAGTAGTATGTCTGCTTCGGTATCAACCCTTGGGGACATTGGATGGTTACTGCATGTTCAGAATGTGTTGGCTGGAGCAGCTTGGATTGCTGCTCGTGTTGCAATTGAAAACTCTTCTGTTCTTGTGCATTGCAGTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCGTATTATCGGACATTCACAGGGTTTCAGGCACTTGTTGAAAAAGATTGGCTTGCTTTTGGTCATCCATTTTCTGACCGGGTGGGAATGCCGTCTGTCTCTGGAACTGGCAACATGCCTTTTGAGTTATCTAGGCAGCCTTCAACTGGAAATTTTGCACCGTCACCTGTCCACCAGTCAACAGGAACATTTTCATCACAACCTCCAGCTTCATCTCACTCACATAACAACAACAACTATTCTCCTATTTTTTTGCAGTGGGTTGATTGTGTTTCACAATTATTGCGGATGTATCCTTTTGCTTTTCAATTCTCTGCGGCTTTCCTGGTGGACTTCATAGACTGCATGCTTTCTTGTCGTTTTGGAAACTTCTTATGTAACAGTGAGAAGGAGAGGCAGAAATGCAATGTTTTTGAGGCATGTGGATGTCTGTGGGTTTATTTAGCTGATTTACGGACATCAGAAGGAGGTTCCCATGTGCATTACAATCCCTTCTATGATCCACTCAAGCATAATGGTGCTCTTCTACCCCCAGCAGCAGCATTGGCGCCTACATTGTGGCCCCAATTTCACCTTCGTTGGGCATGCCCAGAAGAAGCACAAGCTGGGGAGATTGAAGCGCAATGCAGGAAGATAGTTATGAAATGCTCTGAGATGCAGAAGGCTAAAGAAATGGCAGAAAGAAAAGTTAAAGAAGTTACAAATTCCATGGAGTCACTGAATGCTGAATTACGACGTGAGAAGCAGATAAACAGCTCAGCTATGAACATGGCAAAGAGTGTGAGCAAAGAAAATATGGCTATAAAGCGTGCAATTCAATCAATGGGGTGCAAGGTTCATGTCTCTGGTAGTGGTGAATGCACTGTTGACATTGAAAGCAACCCAGACATTCTGTGTTGTTCCTCAAGAAAAGAAACAAATAGTAATGTGCGTGATGACAAAACGGACCCACCTGTTTCAGTACAAGTTACAGCAGATGATGATGATGATGGAAACAGTGGGATTGTTCGGGTATGTGAAACTCTATGCCCATTTGGCTCTGGAGGTGGAGGCTGCAGGTGGCCAAATGGTGGTTGTGCTCAACTAGGTAGCCAGTATGTTGGCCTCAAGGCAAACTTTGATGCATTTGACCAACTGTCAATTAATGATAGTTATTTCAAGTCTGAGTGA 2577 0.4389 MDDVPKHRATRTTSLRDVSDFSKMEVTGSWDALEWTKIEPITPFVSNANFDFLIESEQVVAEVVSSVICGEGHGVVLVNTDDAGTLMVTNFRLIFLSEGTRKVISLGTIPLATIEKFNKIVVKVQSNNRYVDKTPAQRLLQVIGKDMRILVFSFRPRTKQRRLVFDALLRCTKPTRLWDLYAFASGPSRFKNTTPLVRLLDEYCRLLCLGSYHASMDIIENGSFTWSNELWRISSVNSSYTMCQSYPFALVVPKIISDEEVLQASSFRARCRLPVVSWCHPLTGAVVARSSQPLVGIMMNMRSNMDEKLVAGLCSKLDSGSRRKLYIVDARPRKNALANGAMGGGSESSSNYFQSEVVFLGIDNIHAMRDSFVRLREYMDTHGRASSDGMSSFLRQGGSTWGGGNLSSMSASVSTLGDIGWLLHVQNVLAGAAWIAARVAIENSSVLVHCSDGWDRTSQLVSLANLLLDPYYRTFTGFQALVEKDWLAFGHPFSDRVGMPSVSGTGNMPFELSRQPSTGNFAPSPVHQSTGTFSSQPPASSHSHNNNNYSPIFLQWVDCVSQLLRMYPFAFQFSAAFLVDFIDCMLSCRFGNFLCNSEKERQKCNVFEACGCLWVYLADLRTSEGGSHVHYNPFYDPLKHNGALLPPAAALAPTLWPQFHLRWACPEEAQAGEIEAQCRKIVMKCSEMQKAKEMAERKVKEVTNSMESLNAELRREKQINSSAMNMAKSVSKENMAIKRAIQSMGCKVHVSGSGECTVDIESNPDILCCSSRKETNSNVRDDKTDPPVSVQVTADDDDDGNSGIVRVCETLCPFGSGGGGCRWPNGGCAQLGSQYVGLKANFDAFDQLSINDSYFKSE 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02646 858 Coils Coil 685 719 - -
Vimu3g02646 858 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 224 664 IPR029021 -
Vimu3g02646 858 PANTHER MYOTUBULARIN-RELATED 44 772 IPR030564 -
Vimu3g02646 858 SUPERFAMILY PH domain-like 55 184 - -
Vimu3g02646 858 CDD PTP-MTM-like 271 562 - -
Vimu3g02646 858 ProSiteProfiles Myotubularin phosphatase domain. 208 660 IPR010569 -
Vimu3g02646 858 Gene3D - 74 172 IPR011993 -
Vimu3g02646 858 ProSitePatterns Tyrosine specific protein phosphatases active site. 448 458 IPR016130 GO:0016311|GO:0016791
Vimu3g02646 858 Pfam Myotubularin-like phosphatase domain 181 602 IPR010569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02646 Vimu-Chr3 40700761 40721668 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02646 5 856 Protein tyrosine phosphatase (PTP) family AT3G10550 65.891 0.0 1120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02646 K18081 - gmx:100781842 1512.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02646 3 40700761 40721668 Vimu3g02646 3 40700761 40721668 ECH