Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02635 ATGTTGGAAATGGAGAAGGATTTTGATTCGAAGCTGAAGATTCAGGGGAATACCTCATCTTCCAATGGTGGAGGCAATGTCCAGAGATCCAAGAGCTTTGCTTTTAGGGCTCCTCAGGAGAATTACACTATCCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGCTCTTATTCCAAGATTTCCGATGCTTCTGCCTTTCCAGCTCCCTTACCTGCATGCTCCGTCTCTTACGGGATTTATGATTTGGTTGTGAGGGCAAAGAAGAAGGACACAGGAACTGTCTATGCATTGAAGATCATGGATAAAAAGTTTATTACTAAGGAGAACAAAACAGCTTATGTGAAATTGGAACGCATTGTGCTAGATCAATTGGATCATCCAGGCATTGTGCGGTTATATTTCACATTTCAAGATTCATTTTCTCTATACATGGCACTTGAATCCTGCGAAGGTGGAGAACTTTTTGATCAAATAACCAGGGAAAAATCTGAAGAGCTTCGAGACCTCAACTTTGCAACTAAGGGTCATCTTGGGATTTGTGGAGAGCTGAGTAGAGATGGGAAACTAAAACTGTGTCAGTGGTTTACGAAAGTATTTGTACTCAGTATTATTTTGGATATGGACGTTGTTAATTTGTCTGCTAGTATTTTTGTGAATGCTTGTTACTACATGATATCTACTAGCAAGCTTTCTTATTTCTTTGTGCAGAAAGGTCGTCTAACTGAGGATGAGGCACGGTTCTATGCAGCTGAAGTTGTTGATGCTCTTGAATACATACATAGTTTGGGAGTCATACACCGTGATATTAAGCCAGAGAACTTGTTACTCACAGCTGACGGACACATTAAAATAGCGGATTTTGGGAGTGTGAAGCCTATGCAGGATAGTCAAATCACTGTCCTTCCAAATGCAGCGTCTGATGACAAAGCCTGCACTTTTGTGGGAACAGCTGCTTATGTTCCTCCAGAGGTTCTTAATTCCTCTCCAGCAACTTTTGGCAATGACCTATGGGCACTTGGCTGCACATTATACCAAATGCTTTCTGGAACTTCCCCTTTTAAAGACGCAAGTGAATGGCTTATTTTTCAAAGAATTGTAGCAAGGGAACTTAGATTTCCAGATTACTTTTCTGATGAAGCAAGAGAGCTCATTGACCGTCTGTTGGATTTGGAACCCAGCAGGAGACCAGGTGCTGGACCTGATGGTTATGCTATTTTGAAAGCACACCCATTTTTCAAGGGAGTTGATTGGAAGAACTTGAGGGCACAAATTCCTCCAAAACTTGCTCCGGAACCTGGGACTCAGTCACCTGCAGCTGATGATGTTCATGATTCGTCATGGAGTCCTTCTCACATTGGGGATTGTCACTCAGCTTCAGTTAGACAACCTGATGGTGCTACATCTTCTGATGGGTCTAGTCACATAACTAGGCTAGCTTCAATTGATTCCTTTGATTCAAAATGGCAACAGTTTTTGGATCCTGGGGAATCTGTTCTTATGATCTCTATGGTGAAGAAATTACAAAAACTAACAAGCAAGAAGGTGCAGCTCATCCTCACCAACAAACCAAAGTTGATCTATGTGGACCCATCAAAGCTAATTGTGAAGGGAAATATAATATGGTCTGATAATCCAAATGATCTAAGCATCCAAGTGACTACTGCATCAAACTTCAAGATTTGCACACCTAAAAAGGTAATGTCGTTTGAAGATGCTAAGCAAAGAGCATGGCAGTGGAAGAAGGCAATTGAAGGACTTCAAAACCGGTGA 1773 0.4162 MLEMEKDFDSKLKIQGNTSSSNGGGNVQRSKSFAFRAPQENYTIQDFELGKIYGVGSYSKISDASAFPAPLPACSVSYGIYDLVVRAKKKDTGTVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGIVRLYFTFQDSFSLYMALESCEGGELFDQITREKSEELRDLNFATKGHLGICGELSRDGKLKLCQWFTKVFVLSIILDMDVVNLSASIFVNACYYMISTSKLSYFFVQKGRLTEDEARFYAAEVVDALEYIHSLGVIHRDIKPENLLLTADGHIKIADFGSVKPMQDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIVARELRFPDYFSDEARELIDRLLDLEPSRRPGAGPDGYAILKAHPFFKGVDWKNLRAQIPPKLAPEPGTQSPAADDVHDSSWSPSHIGDCHSASVRQPDGATSSDGSSHITRLASIDSFDSKWQQFLDPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLSIQVTTASNFKICTPKKVMSFEDAKQRAWQWKKAIEGLQNR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02635 590 Gene3D - 459 590 IPR011993 -
Vimu3g02635 590 PANTHER SERINE/THREONINE-PROTEIN KINASE 32 440 - -
Vimu3g02635 590 MobiDBLite consensus disorder prediction 451 474 - -
Vimu3g02635 590 Pfam PH domain 487 589 IPR033931 -
Vimu3g02635 590 SMART serkin_6 47 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02635 590 CDD STKc_PDK1 45 413 IPR039046 GO:0004674
Vimu3g02635 590 SUPERFAMILY PH domain-like 407 589 - -
Vimu3g02635 590 MobiDBLite consensus disorder prediction 426 474 - -
Vimu3g02635 590 FunFam 3-phosphoinositide-dependent protein kinase 2-like 74 153 - -
Vimu3g02635 590 Gene3D Phosphorylase Kinase; domain 1 3 176 - -
Vimu3g02635 590 ProSiteProfiles Protein kinase domain profile. 47 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02635 590 Gene3D Transferase(Phosphotransferase) domain 1 217 433 - -
Vimu3g02635 590 FunFam 3-phosphoinositide-dependent protein kinase 2-like 230 428 - -
Vimu3g02635 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Vimu3g02635 590 Pfam Protein kinase domain 226 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02635 590 Pfam Protein kinase domain 80 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02635 590 MobiDBLite consensus disorder prediction 13 27 - -
Vimu3g02635 590 MobiDBLite consensus disorder prediction 1 27 - -
Vimu3g02635 590 FunFam 3-phosphoinositide-dependent protein kinase 1 461 590 - -
Vimu3g02635 590 Coils Coil 570 590 - -
Vimu3g02635 590 SUPERFAMILY Protein kinase-like (PK-like) 79 463 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02635 Vimu-Chr3 40524524 40534087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02635 235 590 AGC Kinase Gene Family AT3G10540 80.112 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PDK1 Vimu3g02635 Pkinase 3.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02635 K06276 - gmx:100788780 683.715