Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02632 ATGGGGAAGAATGAAGAGAACGATGCTCTTACAAAGAACAAACCTGCCACTGAAAAGGATATTTTGGCCGAGCTTGAGTTGAAAATGAAAAAGTATCTGAGAGGAGAAAGTGCTAATTTGGAGGTTTTGAAGGATAAAAAGCTGAAGGGTCAACTAGCTGTTAAAGAGAAGTTATATGGAAAATCTGCACAAGCTGCTGCCAAGGCCGAGAAGTGGCTTATGCCTAGTGAAGGAGGTTATCTGGAGGCTGAAGGCTTGGAAAAGACATGGAGGATCAAACAGGAGACAATAGCTCATGAAGTAGATATCTCAAGCTCACGGAAACAGTATGATATTATTTTACCAGTCTGGTCAGATGTTAACCCATTAATTCATCAAACTGTGCAGCAGCACATTACCCCAACGTTGTCCATCAAGTCCATGCAACTTGGTCCATACACTCTGGATTTTACTTCAAGTGGCCGGTATATGGCTGTGGGTGGTCGTAAGGGCCATCTAGGAATAGTGGACATGATAAATCTGAGCCTAATTAGAGAGCTTCAGGTAAGGGAAACAGTGCGTGATGTGGTATTCTTGCACAATGAGCTCTTTTTCGCTGCTGCACAGAAAAAGTATCCATACATCTATAATCGAGAAGGCACCGAGCTTCACTGCCTTAAGGAACATGGTCCGGTGTTGAGGCTTCAGTTTCTGAAAAACCATTTTCTCTTGGCTACACTCAATAAGTTTGGGCAGCTTCGCTATCAGGATGTTACAATGGGTTCAATGGTTGGTAATTTTCGAACTGGCTTAGGACGTACAGATGTGATGCAAGTAAACCCCTTCAATGGAGTTGTTTCTTTAGGTCACTCAGGTGGTACTGTCACCATGTGGAAGCCGACCAGTTCTGCTCCTCTTGTCAAGATGCTATGTCATAAGGGGCCTGTTTCAGCGCTGGCATTTCACTCAAATGGCCACTTGATGGCCACTGCAGGGAAAGATAAAAAAATCAAGCTTTGGGACTTAAGGAAATTTGAGGTTCTTCAAACCTTACCTGGTCATGCAAATACTCTGGATTTTAGTCAGAAGGGTTTACTTGCTTGCGGTAATGGCTCATTGATCCAGGTTCTGCGAGATGTTTCTGGTACACAAAATTATTCCAGGTACATGACTCATTCCATGGTGAAAGGTTACCAGGTAGGAAAATTAATATTTCGACCATATGAAGACGTTTTAGGTATAGGGCATTCCACGGGTTGGTCTAGTATTCTTATTCCAGGAGCTGGAGAACCCAACTTTGACTCATGGGTTGCAAACCCGTTCGAAACTTCCAAACAGAGAAGAGAAAAGGAAATACGGGCTCTACTTGATAAGCTCCCCCCCGAGACTATCATGTTGGATCCCAGCAAGATTGGAACGGTGAAACCAAAAAGAGAGAAGCCAACAAAGCAAGAGAGGGAGGCTGAGGTGGAAGCTGCTGTTGAAGCTGCTAAGGGCATGAAACTGAAGAAGAAGACAAAAGGAAGAAACAAGCCAGGTAAAAGAGTACAGAAAAAGCAAGAGGCAGTTAGTAGAGTGAAGAGGCCCTACTTGGAGCAGAAAATTCAAGAAGAGGAAAACATGTCAAGAAAGAAGCAGAAAACTAGTGAGGGTGTTGAACTACCAAAATCTTTACAACGGTTTGCTCGTAAAAAAGCATCATCGTGA 1686 0.4342 MGKNEENDALTKNKPATEKDILAELELKMKKYLRGESANLEVLKDKKLKGQLAVKEKLYGKSAQAAAKAEKWLMPSEGGYLEAEGLEKTWRIKQETIAHEVDISSSRKQYDIILPVWSDVNPLIHQTVQQHITPTLSIKSMQLGPYTLDFTSSGRYMAVGGRKGHLGIVDMINLSLIRELQVRETVRDVVFLHNELFFAAAQKKYPYIYNREGTELHCLKEHGPVLRLQFLKNHFLLATLNKFGQLRYQDVTMGSMVGNFRTGLGRTDVMQVNPFNGVVSLGHSGGTVTMWKPTSSAPLVKMLCHKGPVSALAFHSNGHLMATAGKDKKIKLWDLRKFEVLQTLPGHANTLDFSQKGLLACGNGSLIQVLRDVSGTQNYSRYMTHSMVKGYQVGKLIFRPYEDVLGIGHSTGWSSILIPGAGEPNFDSWVANPFETSKQRREKEIRALLDKLPPETIMLDPSKIGTVKPKREKPTKQEREAEVEAAVEAAKGMKLKKKTKGRNKPGKRVQKKQEAVSRVKRPYLEQKIQEEENMSRKKQKTSEGVELPKSLQRFARKKASS 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02632 561 MobiDBLite consensus disorder prediction 508 544 - -
Vimu3g02632 561 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 343 IPR001680 GO:0005515
Vimu3g02632 561 MobiDBLite consensus disorder prediction 465 494 - -
Vimu3g02632 561 FunFam Os01g0183100 protein 211 405 - -
Vimu3g02632 561 Gene3D - 115 269 IPR015943 GO:0005515
Vimu3g02632 561 SUPERFAMILY WD40 repeat-like 135 410 IPR036322 GO:0005515
Vimu3g02632 561 MobiDBLite consensus disorder prediction 459 561 - -
Vimu3g02632 561 ProSitePatterns Trp-Asp (WD) repeats signature. 321 335 IPR019775 -
Vimu3g02632 561 PANTHER WD-REPEAT PROTEIN BING4 6 556 IPR040315 -
Vimu3g02632 561 Gene3D - 270 377 IPR015943 GO:0005515
Vimu3g02632 561 SMART WD40_4 295 334 IPR001680 GO:0005515
Vimu3g02632 561 SMART WD40_4 337 371 IPR001680 GO:0005515
Vimu3g02632 561 SMART WD40_4 173 210 IPR001680 GO:0005515
Vimu3g02632 561 SMART WD40_4 131 170 IPR001680 GO:0005515
Vimu3g02632 561 Pfam BING4CT (NUC141) domain 382 460 IPR012952 -
Vimu3g02632 561 Pfam WD domain, G-beta repeat 304 334 IPR001680 GO:0005515
Vimu3g02632 561 SMART BING4CT_2 381 461 IPR012952 -
Vimu3g02632 561 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 302 336 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02632 139 357 U-box Gene Family AT2G33340 25.541 2.19e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02632 K14768 - gmx:100786818 947.962