Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02628 ATGACCATGTATGCTCGCCGCTCTCTGCACCCGGATGGACCTGGCTGGAATTCAGTCATCAGACCGCCACCCGAGGTTAGTCCAGTGGAACCACCTCAGTATAGAAATACCCTGAGGCTAAAGGACCTCCTGCCATTACCACGCATGAGTTACCCTTCTCTACCTGAGAAGGCGAAGAATTATTCTGAAAGGTGTAAGGTGATCAGAGAAGAGGGGGTGGCGAGAATTTTAGAGAGAGGTTGGAGAAAAATGGTGGCCGGAAGACTGGAGAAGAAACTTGCATGTAGAAAAATGACTTCATATTTGAAATCCCAACTTAAATATCATTATCGTAACCGAACGGTCCACTTAGCTGTAGCCACATGTCCTCCACTAACTGAGTTCTGGACTCCATGCACTGCCACTTGGATTCCATTTTCTGCAATTGCCCTCCTCTCATGCTGCCACACGCTGACGGCTTTGTCTCCCACCACTATGGAGAAACTAGGAAGATTCTCTCTTTTGCCCTTCGAAACTGTTGCCACGCGCCACCGCAACAATCTTCCTCTTTCGCTGAGAATCGTCAATAATTGTCATCGTAATCGAAGTATGGCGCTCAAGGCTGCTTCAGGTTCTGTACCAAGTGCAGACAAAAGTAATGTCAGCAAGGAGGAGGAAAAGTCCGAGACATATTCTCATAACATGACCGAAGCCATGGGTGCTGTTTTGACTTATAGGCACGAGTTAGGAATGAACTATAACTTCATCCGTCCAGACTTAATTGTGGGATCATGCCCACAGACTCCTGACGATGTTGAGAAGTTGCGTAGAATTGGAGTGAAAACAATATTTTGCTTACAACAAAATCCAGACCTTGAGTATCCTAATCAATTTGCCATACAAGAATATGCCAAGGCACATGATGTTCAACACTTGCGAGCTGAGATAAGGGACTTTGATGCATTTGATCTACGGATGCGGCTTCCAGCTGTAGTTAGCAAATTGTATAAGGCAATAAATTCCAACGGAGGCGTAACATATATTCATTGCACTGCTGGACTTGGAAGAGCTCCTGCCGTTGCAGCTGTGCATCTGACCTTCCCCACTCCAAGATTTCACAATAGTGGGAGCCTTAGGCATCGGACGACCCCTTTTATTACGGCCTACATGTTTTGGGTTCTCGGTTATACATTCAAAGAGGCTCATACACTACTTCAGAGCAAAAGGGAGTGTTTTCCCAAACTAGATGCCATTAAAAGTGCAACGGCTGACATCCTTACAGGCCTTAGTAAGAAACCTGTCACTTTGTCATGGGAAGACAGCAGTTGCTCTAGGGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGAGAGTACCCCTAGATTTTGATGACAAATCGGGTTTGTGGTATCTCGAGAGGGAATTACCTATTGATGAGAAACAAGTTTATTGTCCTATTTACCAGGAAGGACGCTATGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAATAAAGATGAGCTTGTAACTGCTCCCAACAAAGATGGCCATGTCAACAATTTCATTCAAGTCCTTGATAATAGCAGCAGTGGTCGTGTTTCCCTTCGGGAGAGATTCAGTTCTGATGATCCTGATCTTACACCGGAGGAACGACTGAGAATAAAGGAGTTTCTTGAAGCTTGTCCTGATGAGGATCTGTGA 1686 0.4531 MTMYARRSLHPDGPGWNSVIRPPPEVSPVEPPQYRNTLRLKDLLPLPRMSYPSLPEKAKNYSERCKVIREEGVARILERGWRKMVAGRLEKKLACRKMTSYLKSQLKYHYRNRTVHLAVATCPPLTEFWTPCTATWIPFSAIALLSCCHTLTALSPTTMEKLGRFSLLPFETVATRHRNNLPLSLRIVNNCHRNRSMALKAASGSVPSADKSNVSKEEEKSETYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCPQTPDDVEKLRRIGVKTIFCLQQNPDLEYPNQFAIQEYAKAHDVQHLRAEIRDFDAFDLRMRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAVAAVHLTFPTPRFHNSGSLRHRTTPFITAYMFWVLGYTFKEAHTLLQSKRECFPKLDAIKSATADILTGLSKKPVTLSWEDSSCSRVEISGLDIGWGQRVPLDFDDKSGLWYLERELPIDEKQVYCPIYQEGRYEYKYIVDGEWTCNKDELVTAPNKDGHVNNFIQVLDNSSSGRVSLRERFSSDDPDLTPEERLRIKEFLEACPDEDL 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02628 561 CDD E_set_AMPKbeta_like_N 426 519 - -
Vimu3g02628 561 Pfam Glycogen recognition site of AMP-activated protein kinase 426 522 IPR032640 -
Vimu3g02628 561 SUPERFAMILY E set domains 425 520 IPR014756 -
Vimu3g02628 561 CDD DSP_laforin-like 244 413 IPR045204 GO:0019203
Vimu3g02628 561 Gene3D Protein tyrosine phosphatase superfamily 227 424 IPR029021 -
Vimu3g02628 561 MobiDBLite consensus disorder prediction 201 225 - -
Vimu3g02628 561 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 181 360 - -
Vimu3g02628 561 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 239 358 IPR029021 -
Vimu3g02628 561 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 319 358 IPR000387 GO:0016311|GO:0016791
Vimu3g02628 561 Gene3D Immunoglobulins 425 523 IPR013783 -
Vimu3g02628 561 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 422 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02628 Vimu-Chr3 40475122 40485345 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02628 244 561 Protein tyrosine phosphatase (PTP) family AT3G52180 58.879 3.40e-130 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02628 - - pvu:PHAVU_007G145000g 608.601