Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02625 ATGGCTTTCACTCCTAGATTGGGGAAGGAATTTTCTGTGAGGATGACAGATTTTCAGCCGCTACAGCAGAAACCCGAGCCTGCTGATTCCCATTCCGAGTTTGAGAGGGGACTGGAGGAGTTTATGCGCGGCCACTTGGATGAGTGTATGTCGTTTGCTTCATGTAGCTCCTCCCGCGCACCTGATGATGAGGATGACGAGAGCGATCAGCTGGTTCGGAGGAGACGGAGGTCTGACCTTGAAGGGGATGATTTAGCAGAGTCTTCGGCTGCACGCCGGCGGCATTCAAGAATTTTGAGCAGATGGGCTGCACGGCAGGCACAGGAAATGATAACCACTATTGAGAGGAGGAATCGAGAGTCTGAGTTGATGGCGCTTGCGGGTTTGCATACAGTTTCGATGTTGGATTCTTCTTTCCTGAGGGGCTCACAGTCTCCAACTTCTGGTCAGGAGGGGGCTGTGGAGAGGCCAAGCACTCAGGCGTCTGCCATTTTGCAGATGTGGCGTGAATTGGAAGATGAACATTTGTTGAACCGGGCACGGGAAAGGATGAGGGTAAGGTTGCGGCAGCAGAGGAATTCTGACTCTAATACCAATGTGTCCAGTACCATGTCAGATAGTCGAGGCAGTGAGAATCATGGGAGTTTGGGAGATGCAAGTGAAAGTGAAAATGATTATGGTACTTGGTCACATGATCAGATTGGGTCGAGGAATGCACATGGGGATCATAACGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATAGTTCGGGGGTGGATGGAAAGTGGCATTAGTGATCATTCCTCCAATGTGAGTCAGCGAAACAATAACCGCAGAGCAGAATGGCTTGGAGAAACAGAGCGTGAGAGGGTAAGAATTGTCAGGGAATGGGTGCAAATGACTAGCCAGCAGAGAGGTTCACGTGGGAGCCGTAGGGATTCTCAAGTGAGTGAAGGTGCTCAAGCTGATCCAGTCCGTCATGTAGCTGACAATGATGAGAGTCAGCCAGAGCATGTCCGGCGGGATATGTTGAGGTTGCGCGGAAGACAGGCTCTAGTTGATTTGCTAGTGAGGATAGAAAGGGAAAGACAAAGAGAGCTACAGGGATTGCTGGAGCATCGAGCTGTTTCTGATTTTGCTCATCGCAACCGTATTCAGTCACTGCTTAGAGGTAGATTCCTCCGAAATGAAAGAACTGTTGAAGACGAGAGGCCACCATCTATGGCCGCTAGTGAATTAGTTCAGCTAAGACAACGGCACACAGTCTCTGGTTTAAGATTAGAAAATATTGTCCGTGGTCAAGCAGGCACAAATCCTGATACCACATCAAATAGTAATGCCACTGAAACAAGAGGGGATGAAAACCAAGCAAACAGTATGGTAGATGGCCAACAAGAAAATTATGAACAACAGCAGATTAGGAACCTGGAAACTGATGTGCGTCAGTTGCCTAATGGAACAGGAACTATGGAGAGTAGCACAAGTGAGAGTATTAGTTGGCAAGAAACTGGTAACCAAGGAGGGCATTGGCAGGAACAAATTGCCGAGGAAGGGGGAGGAAATTGGCAACATAGTCCATTCAATCAGACGAGTGATGGAAGGGCAGTCAATGATTGGCCACAGGAACCTCCCAGAAATTTAGCTGGGGAGGATCCTCATCCACGGGAAGTTCAAAGAATTTGGCATGAAGATAACACTAGGGAAACTGCTGGTAATTGGTCCGATGGACCTTCTGGAGTTTCGAGGAATCACCGTGGGGTTCCTGTTAGAAGATTCAACAGATTTCATCCACCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTTCTACGCAGTGGTTTCCGGGAAAGTCTGGACCAACTAATACAGTCATATGTGGAAAGGCAAGGTCGGGCACCAATTGACTGGGATTTGCATCGGAATTTGCCTACACCAACTCCTGCTTCACCTGAACGGGACCCAGATCAGCAGACTGGTGAACGAGCTGAGGGTCAGCATGAAACAATTAACAGACCTTCACTGGTGTTGCCATCTCCACCTGTGCCTCCGCCACAACCTCTGTGGCACCAGGATTTACATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTGAGTGGGAGATAATGAATGATTTAAGATCAGATATGGCAAGACTTCAGCAAGGTATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTGGAGTTGCAGCGCTCTGTCAGACAGGAAGTATCTGCAGCTCTGAACCGCTCAGCCGGTGAAAACGGATTGGGTGCTGAGACATCTGATGATGGGTCTAGATGGGGGCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCTCTTTTGTACAGATGCGGGCACATGTGTACTTGTTCAAAATGTGCCAATGAGTTAATTCGTGGTGGTGGTAAGTGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA 2571 0.4827 MAFTPRLGKEFSVRMTDFQPLQQKPEPADSHSEFERGLEEFMRGHLDECMSFASCSSSRAPDDEDDESDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRVRLRQQRNSDSNTNVSSTMSDSRGSENHGSLGDASESENDYGTWSHDQIGSRNAHGDHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDSQVSEGAQADPVRHVADNDESQPEHVRRDMLRLRGRQALVDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTVEDERPPSMAASELVQLRQRHTVSGLRLENIVRGQAGTNPDTTSNSNATETRGDENQANSMVDGQQENYEQQQIRNLETDVRQLPNGTGTMESSTSESISWQETGNQGGHWQEQIAEEGGGNWQHSPFNQTSDGRAVNDWPQEPPRNLAGEDPHPREVQRIWHEDNTRETAGNWSDGPSGVSRNHRGVPVRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPASPERDPDQQTGERAEGQHETINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGAETSDDGSRWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02625 856 MobiDBLite consensus disorder prediction 191 235 - -
Vimu3g02625 856 MobiDBLite consensus disorder prediction 310 348 - -
Vimu3g02625 856 MobiDBLite consensus disorder prediction 444 468 - -
Vimu3g02625 856 ProSitePatterns Pyrokinins signature. 3 8 IPR001484 GO:0005184|GO:0007218
Vimu3g02625 856 ProSiteProfiles Zinc finger RING-type profile. 804 843 IPR001841 -
Vimu3g02625 856 MobiDBLite consensus disorder prediction 532 546 - -
Vimu3g02625 856 Coils Coil 733 753 - -
Vimu3g02625 856 MobiDBLite consensus disorder prediction 187 258 - -
Vimu3g02625 856 CDD mRING-HC-C3HC5_NEU1 801 853 - -
Vimu3g02625 856 MobiDBLite consensus disorder prediction 66 92 - -
Vimu3g02625 856 MobiDBLite consensus disorder prediction 435 468 - -
Vimu3g02625 856 MobiDBLite consensus disorder prediction 492 595 - -
Vimu3g02625 856 MobiDBLite consensus disorder prediction 14 35 - -
Vimu3g02625 856 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 124 856 - -
Vimu3g02625 856 SUPERFAMILY RING/U-box 803 849 - -
Vimu3g02625 856 MobiDBLite consensus disorder prediction 657 697 - -
Vimu3g02625 856 MobiDBLite consensus disorder prediction 310 327 - -
Vimu3g02625 856 MobiDBLite consensus disorder prediction 54 92 - -
Vimu3g02625 856 MobiDBLite consensus disorder prediction 558 579 - -
Vimu3g02625 856 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 788 854 IPR013083 -
Vimu3g02625 856 Pfam Zinc finger, C3HC4 type (RING finger) 801 848 - -
Vimu3g02625 856 MobiDBLite consensus disorder prediction 492 520 - -
Vimu3g02625 856 MobiDBLite consensus disorder prediction 236 258 - -
Vimu3g02625 856 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02625 Vimu-Chr3 40431304 40436939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02625 804 850 C3H Transcription Factor Family AT3G06140 42.553 1.41e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02625 - - gmx:100805607 1502.65