Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu3g02625 | ATGGCTTTCACTCCTAGATTGGGGAAGGAATTTTCTGTGAGGATGACAGATTTTCAGCCGCTACAGCAGAAACCCGAGCCTGCTGATTCCCATTCCGAGTTTGAGAGGGGACTGGAGGAGTTTATGCGCGGCCACTTGGATGAGTGTATGTCGTTTGCTTCATGTAGCTCCTCCCGCGCACCTGATGATGAGGATGACGAGAGCGATCAGCTGGTTCGGAGGAGACGGAGGTCTGACCTTGAAGGGGATGATTTAGCAGAGTCTTCGGCTGCACGCCGGCGGCATTCAAGAATTTTGAGCAGATGGGCTGCACGGCAGGCACAGGAAATGATAACCACTATTGAGAGGAGGAATCGAGAGTCTGAGTTGATGGCGCTTGCGGGTTTGCATACAGTTTCGATGTTGGATTCTTCTTTCCTGAGGGGCTCACAGTCTCCAACTTCTGGTCAGGAGGGGGCTGTGGAGAGGCCAAGCACTCAGGCGTCTGCCATTTTGCAGATGTGGCGTGAATTGGAAGATGAACATTTGTTGAACCGGGCACGGGAAAGGATGAGGGTAAGGTTGCGGCAGCAGAGGAATTCTGACTCTAATACCAATGTGTCCAGTACCATGTCAGATAGTCGAGGCAGTGAGAATCATGGGAGTTTGGGAGATGCAAGTGAAAGTGAAAATGATTATGGTACTTGGTCACATGATCAGATTGGGTCGAGGAATGCACATGGGGATCATAACGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATAGTTCGGGGGTGGATGGAAAGTGGCATTAGTGATCATTCCTCCAATGTGAGTCAGCGAAACAATAACCGCAGAGCAGAATGGCTTGGAGAAACAGAGCGTGAGAGGGTAAGAATTGTCAGGGAATGGGTGCAAATGACTAGCCAGCAGAGAGGTTCACGTGGGAGCCGTAGGGATTCTCAAGTGAGTGAAGGTGCTCAAGCTGATCCAGTCCGTCATGTAGCTGACAATGATGAGAGTCAGCCAGAGCATGTCCGGCGGGATATGTTGAGGTTGCGCGGAAGACAGGCTCTAGTTGATTTGCTAGTGAGGATAGAAAGGGAAAGACAAAGAGAGCTACAGGGATTGCTGGAGCATCGAGCTGTTTCTGATTTTGCTCATCGCAACCGTATTCAGTCACTGCTTAGAGGTAGATTCCTCCGAAATGAAAGAACTGTTGAAGACGAGAGGCCACCATCTATGGCCGCTAGTGAATTAGTTCAGCTAAGACAACGGCACACAGTCTCTGGTTTAAGATTAGAAAATATTGTCCGTGGTCAAGCAGGCACAAATCCTGATACCACATCAAATAGTAATGCCACTGAAACAAGAGGGGATGAAAACCAAGCAAACAGTATGGTAGATGGCCAACAAGAAAATTATGAACAACAGCAGATTAGGAACCTGGAAACTGATGTGCGTCAGTTGCCTAATGGAACAGGAACTATGGAGAGTAGCACAAGTGAGAGTATTAGTTGGCAAGAAACTGGTAACCAAGGAGGGCATTGGCAGGAACAAATTGCCGAGGAAGGGGGAGGAAATTGGCAACATAGTCCATTCAATCAGACGAGTGATGGAAGGGCAGTCAATGATTGGCCACAGGAACCTCCCAGAAATTTAGCTGGGGAGGATCCTCATCCACGGGAAGTTCAAAGAATTTGGCATGAAGATAACACTAGGGAAACTGCTGGTAATTGGTCCGATGGACCTTCTGGAGTTTCGAGGAATCACCGTGGGGTTCCTGTTAGAAGATTCAACAGATTTCATCCACCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTTCTACGCAGTGGTTTCCGGGAAAGTCTGGACCAACTAATACAGTCATATGTGGAAAGGCAAGGTCGGGCACCAATTGACTGGGATTTGCATCGGAATTTGCCTACACCAACTCCTGCTTCACCTGAACGGGACCCAGATCAGCAGACTGGTGAACGAGCTGAGGGTCAGCATGAAACAATTAACAGACCTTCACTGGTGTTGCCATCTCCACCTGTGCCTCCGCCACAACCTCTGTGGCACCAGGATTTACATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTGAGTGGGAGATAATGAATGATTTAAGATCAGATATGGCAAGACTTCAGCAAGGTATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTGGAGTTGCAGCGCTCTGTCAGACAGGAAGTATCTGCAGCTCTGAACCGCTCAGCCGGTGAAAACGGATTGGGTGCTGAGACATCTGATGATGGGTCTAGATGGGGGCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCTCTTTTGTACAGATGCGGGCACATGTGTACTTGTTCAAAATGTGCCAATGAGTTAATTCGTGGTGGTGGTAAGTGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA | 2571 | 0.4827 | MAFTPRLGKEFSVRMTDFQPLQQKPEPADSHSEFERGLEEFMRGHLDECMSFASCSSSRAPDDEDDESDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRVRLRQQRNSDSNTNVSSTMSDSRGSENHGSLGDASESENDYGTWSHDQIGSRNAHGDHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDSQVSEGAQADPVRHVADNDESQPEHVRRDMLRLRGRQALVDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTVEDERPPSMAASELVQLRQRHTVSGLRLENIVRGQAGTNPDTTSNSNATETRGDENQANSMVDGQQENYEQQQIRNLETDVRQLPNGTGTMESSTSESISWQETGNQGGHWQEQIAEEGGGNWQHSPFNQTSDGRAVNDWPQEPPRNLAGEDPHPREVQRIWHEDNTRETAGNWSDGPSGVSRNHRGVPVRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPASPERDPDQQTGERAEGQHETINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGAETSDDGSRWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL | 856 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu3g02625 | 856 | MobiDBLite | consensus disorder prediction | 191 | 235 | - | - | |
Vimu3g02625 | 856 | MobiDBLite | consensus disorder prediction | 310 | 348 | - | - | |
Vimu3g02625 | 856 | MobiDBLite | consensus disorder prediction | 444 | 468 | - | - | |
Vimu3g02625 | 856 | ProSitePatterns | Pyrokinins signature. | 3 | 8 | IPR001484 | GO:0005184|GO:0007218 | |
Vimu3g02625 | 856 | ProSiteProfiles | Zinc finger RING-type profile. | 804 | 843 | IPR001841 | - | |
Vimu3g02625 | 856 | MobiDBLite | consensus disorder prediction | 532 | 546 | - | - | |
Vimu3g02625 | 856 | Coils | Coil | 733 | 753 | - | - | |
Vimu3g02625 | 856 | MobiDBLite | consensus disorder prediction | 187 | 258 | - | - | |
Vimu3g02625 | 856 | CDD | mRING-HC-C3HC5_NEU1 | 801 | 853 | - | - | |
Vimu3g02625 | 856 | MobiDBLite | consensus disorder prediction | 66 | 92 | - | - | |
Vimu3g02625 | 856 | MobiDBLite | consensus disorder prediction | 435 | 468 | - | - | |
Vimu3g02625 | 856 | MobiDBLite | consensus disorder prediction | 492 | 595 | - | - | |
Vimu3g02625 | 856 | MobiDBLite | consensus disorder prediction | 14 | 35 | - | - | |
Vimu3g02625 | 856 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 124 | 856 | - | - | |
Vimu3g02625 | 856 | SUPERFAMILY | RING/U-box | 803 | 849 | - | - | |
Vimu3g02625 | 856 | MobiDBLite | consensus disorder prediction | 657 | 697 | - | - | |
Vimu3g02625 | 856 | MobiDBLite | consensus disorder prediction | 310 | 327 | - | - | |
Vimu3g02625 | 856 | MobiDBLite | consensus disorder prediction | 54 | 92 | - | - | |
Vimu3g02625 | 856 | MobiDBLite | consensus disorder prediction | 558 | 579 | - | - | |
Vimu3g02625 | 856 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 788 | 854 | IPR013083 | - | |
Vimu3g02625 | 856 | Pfam | Zinc finger, C3HC4 type (RING finger) | 801 | 848 | - | - | |
Vimu3g02625 | 856 | MobiDBLite | consensus disorder prediction | 492 | 520 | - | - | |
Vimu3g02625 | 856 | MobiDBLite | consensus disorder prediction | 236 | 258 | - | - | |
Vimu3g02625 | 856 | MobiDBLite | consensus disorder prediction | 139 | 160 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu3g02625 | Vimu-Chr3 | 40431304 | 40436939 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu3g02625 | 804 | 850 | C3H Transcription Factor Family | AT3G06140 | 42.553 | 1.41e-06 | 49.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu3g02625 | - | - | gmx:100805607 | 1502.65 |